SMTL ID : 1ldo.1

avidin-norbioitn complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: G.15, N.17, T.34, A.36, L.123 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.34, A:A.36 Hydrogen bonds: A:G.15, A:N.17 NAG.3: 4 residues within 4Å: Chain B: G.15, N.17, T.34, A.36 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:A.36 Hydrogen bonds: B:G.15, B:N.17 NAG.5: 5 residues within 4Å: Chain C: G.15, N.17, T.34, A.36, L.123 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:T.34, C:A.36 Hydrogen bonds: C:G.15, C:N.17 NAG.7: 4 residues within 4Å: Chain D: G.15, N.17, T.34, A.36 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:A.36 Hydrogen bonds: D:G.15, D:N.17

4 x SNR: NORBIOTIN(Non-covalent)

SNR.2: 14 residues within 4Å: Chain A: N.12, L.14, S.16, Y.33, T.35, V.37, T.38, A.39, W.70, F.72, T.77, W.97, N.118 Chain C: W.110 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.70, A:W.70, A:F.72 Hydrogen bonds: A:N.12, A:S.16, A:T.35, A:T.35, A:T.38, A:A.39, A:N.118 SNR.4: 16 residues within 4Å: Chain B: N.12, L.14, S.16, Y.33, T.35, V.37, T.38, A.39, T.40, W.70, F.72, T.77, W.97, L.99, N.118 Chain D: W.110 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:W.70, B:W.70, B:F.72, B:L.99 Hydrogen bonds: B:N.12, B:S.16, B:Y.33, B:T.35, B:A.39, B:N.118 SNR.6: 14 residues within 4Å: Chain A: W.110 Chain C: N.12, L.14, S.16, Y.33, T.35, V.37, T.38, A.39, W.70, F.72, T.77, W.97, N.118 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:W.70, C:W.70, C:F.72 Hydrogen bonds: C:N.12, C:S.16, C:T.35, C:T.35, C:T.38, C:A.39, C:N.118 SNR.8: 16 residues within 4Å: Chain B: W.110 Chain D: N.12, L.14, S.16, Y.33, T.35, V.37, T.38, A.39, T.40, W.70, F.72, T.77, W.97, L.99, N.118 10 PLIP interactions: 10 interactions with chain D Hydrophobic interactions: D:W.70, D:W.70, D:F.72, D:L.99 Hydrogen bonds: D:N.12, D:S.16, D:Y.33, D:T.35, D:A.39, D:N.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pazy, Y. et al., Ligand exchange between proteins: exchange of biotin and biotin derivatives between avidin and streptavidin. J.Biol.Chem. (2002)

Release Date

2002-11-06

Peptides

avidin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

avidin

Related Entries With Identical Sequence