SMTL ID : 1lev.1

PORCINE KIDNEY FRUCTOSE-1,6-BISPHOSPHATASE COMPLEXED WITH AN AMP-SITE INHIBITOR

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-tetramer

Ligands

4 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.1: 15 residues within 4Å: Chain A: D.121, G.122, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, E.280 Chain B: R.243 Ligands: MN.2 13 PLIP interactions: 10 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:D.121, A:G.122, A:S.124, A:N.212, A:Y.215, A:Y.244, A:M.248, A:Y.264, A:K.274 Salt bridges: A:K.274, B:R.243 Water bridges: B:R.243, B:R.243 F6P.5: 13 residues within 4Å: Chain A: R.243 Chain B: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, E.280 Ligands: MN.6 11 PLIP interactions: 10 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:D.121, B:N.212, B:Y.244, B:Y.244, B:M.248, B:Y.264, B:K.274 Water bridges: B:Y.215, B:Y.264 Salt bridges: B:K.274, A:R.243 F6P.9: 15 residues within 4Å: Chain C: D.121, G.122, S.124, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, L.275, E.280 Chain D: R.243 Ligands: MN.10 12 PLIP interactions: 9 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:D.121, C:G.122, C:S.124, C:N.212, C:Y.244, C:Y.244, C:M.248, C:K.274 Salt bridges: C:K.274, D:R.243 Water bridges: D:R.243, D:R.243 F6P.13: 13 residues within 4Å: Chain C: R.243 Chain D: D.121, G.122, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274, E.280 Ligands: MN.14 10 PLIP interactions: 9 interactions with chain D, 1 interactions with chain C Hydrogen bonds: D:D.121, D:N.212, D:Y.215, D:Y.244, D:M.248, D:K.274 Water bridges: D:Y.215, D:Y.264 Salt bridges: D:K.274, C:R.243

8 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 6 residues within 4Å: Chain A: E.97, D.118, D.121, E.280 Ligands: F6P.1, MN.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.97, A:D.118, A:E.280, H2O.1 MN.3: 6 residues within 4Å: Chain A: E.97, E.98, D.118, L.120, D.121 Ligands: MN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.97, A:D.118, A:L.120, H2O.1 MN.6: 6 residues within 4Å: Chain B: E.97, D.118, D.121, E.280 Ligands: F6P.5, MN.7 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.97, B:D.118, B:D.121, B:E.280 MN.7: 6 residues within 4Å: Chain B: E.97, E.98, D.118, L.120, D.121 Ligands: MN.6 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.97, B:D.118, B:L.120 MN.10: 6 residues within 4Å: Chain C: E.97, D.118, D.121, E.280 Ligands: F6P.9, MN.11 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.97, C:D.118, C:E.280, H2O.5 MN.11: 6 residues within 4Å: Chain C: E.97, E.98, D.118, L.120, D.121 Ligands: MN.10 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.97, C:D.118, C:L.120, H2O.6 MN.14: 6 residues within 4Å: Chain D: E.97, D.118, D.121, E.280 Ligands: F6P.13, MN.15 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.97, D:D.118, D:D.121, D:E.280 MN.15: 6 residues within 4Å: Chain D: E.97, E.98, D.118, L.120, D.121 Ligands: MN.14 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:E.97, D:D.118, D:L.120

4 x CLI: 3-(2-CARBOXY-ETHYL)-4,6-DICHLORO-1H-INDOLE-2-CARBOXYLIC ACID(Non-covalent)

CLI.4: 14 residues within 4Å: Chain A: F.16, V.17, E.20, G.21, G.26, T.27, G.28, E.29, M.30, T.31, L.34, Y.113, L.175, M.177 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:V.17, A:E.20, A:M.30, A:L.34 Hydrogen bonds: A:T.27, A:G.28, A:M.30, A:T.31, A:T.31, A:Y.113 Water bridges: A:E.29, A:K.112, A:R.140, A:R.140 Salt bridges: A:R.140 CLI.8: 12 residues within 4Å: Chain B: F.16, V.17, E.20, G.21, G.26, T.27, M.30, Y.113, R.140, V.160, L.175, M.177 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:E.20, B:M.30, B:V.160 Hydrogen bonds: B:T.27 Salt bridges: B:R.140 Halogen bonds: B:V.160 CLI.12: 14 residues within 4Å: Chain C: F.16, V.17, E.20, G.21, G.26, T.27, G.28, E.29, M.30, T.31, L.34, Y.113, L.175, M.177 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:V.17, C:E.20, C:M.30, C:L.34 Hydrogen bonds: C:T.27, C:G.28, C:M.30, C:T.31, C:T.31, C:T.31 Water bridges: C:E.29, C:K.112, C:R.140, C:R.140 Salt bridges: C:R.140 CLI.16: 12 residues within 4Å: Chain D: F.16, V.17, E.20, G.21, G.26, T.27, M.30, Y.113, R.140, V.160, L.175, M.177 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:E.20, D:M.30, D:V.160 Hydrogen bonds: D:T.27, D:Y.113 Salt bridges: D:R.140 Halogen bonds: D:V.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wright, S.W. et al., 3-(2-carboxyethyl)-4,6-dichloro-1H-indole-2-carboxylic acid: an allosteric inhibitor of fructose-1,6-bisphosphatase at the AMP site. Bioorg.Med.Chem.Lett. (2003)

Release Date

2002-10-16

Peptides

Fructose-1,6-bisphosphatase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
F

C
A

D
F

Fructose-1,6-bisphosphatase