SMTL ID : 1lfw.1

Crystal structure of pepV

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: D.119, E.154, H.439 Ligands: ZN.2, AEP.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:D.119, A:E.154, A:E.154, A:H.439, AEP.3 ZN.2: 7 residues within 4Å: Chain A: H.87, D.119, D.120, E.153, D.177 Ligands: ZN.1, AEP.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.87, A:D.119, A:D.177, A:D.177, AEP.3

1 x AEP: 3-[(1-AMINO-2-CARBOXY-ETHYL)-HYDROXY-PHOSPHINOYL]-2-METHYL-PROPIONIC ACID(Non-covalent)

AEP.3: 16 residues within 4Å: Chain A: H.87, D.119, E.153, E.154, D.177, A.178, N.217, H.269, R.350, G.414, G.415, M.436, M.438, H.439 Ligands: ZN.1, ZN.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.177, A:N.217, A:G.415 Water bridges: A:A.118 Salt bridges: A:H.269, A:R.350, A:H.439

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jozic, D. et al., Crystal Structure of the Dinuclear Zinc Aminopeptidase PepV from Lactobacillus delbrueckii Unravels Its Preference for Dipeptides. Structure (2002)

Release Date

2002-10-23

Peptides

pepV: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

pepV