SMTL ID : 1lgh.2 (1 other biounit)

CRYSTAL STRUCTURE OF THE LIGHT-HARVESTING COMPLEX II (B800-850) FROM RHODOSPIRILLUM MOLISCHIANUM

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-8-8-mer

Ligands

24 x BCL: BACTERIOCHLOROPHYLL A(Non-covalent)

BCL.1: 22 residues within 4Å: Chain A: W.23, A.26, T.27, A.30, H.34, W.45 Chain B: T.23, A.26, F.27, L.30, A.31, A.34, H.35, V.38 Chain L: F.45 Ligands: LYC.3, BCL.7, DET.8, BCL.64, LYC.65, BCL.71, HTO.74 13 PLIP interactions: 5 interactions with chain B, 7 interactions with chain A, 1 interactions with chain L, Hydrophobic interactions: B:T.23, B:A.26, B:F.27, B:A.34, A:A.26, A:W.45, A:W.45, A:W.45, L:F.45 Hydrogen bonds: B:H.35, A:W.45 pi-Cation interactions: A:H.34 Metal complexes: A:H.34 BCL.2: 19 residues within 4Å: Chain A: N.2, P.3, D.6, W.10 Chain B: H.17, F.20, K.21, F.24, S.25, I.28 Chain D: Q.19, T.22, T.23, A.26 Ligands: BCL.7, DET.9, BCL.13, LYC.15, HTO.20 11 PLIP interactions: 4 interactions with chain A, 4 interactions with chain D, 3 interactions with chain B, Hydrophobic interactions: A:N.2, A:P.3, A:W.10, D:T.22, D:A.26, B:F.20, B:F.24, B:I.28 Metal complexes: A:D.6 Hydrogen bonds: D:Q.19, D:T.23 BCL.7: 23 residues within 4Å: Chain A: A.26, V.29, A.30, V.33, H.34, F.43 Chain B: F.24, F.27, I.28, A.31, H.35, V.38, W.44, F.45 Chain C: T.27, W.45 Ligands: BCL.1, BCL.2, LYC.3, DET.9, BCL.13, HTO.20, DET.22 12 PLIP interactions: 10 interactions with chain B, 2 interactions with chain A, Hydrophobic interactions: B:I.28, B:A.31, B:V.38, B:W.44, B:W.44, B:W.44, B:W.44, B:F.45, A:V.33, A:F.43 Hydrogen bonds: B:W.44 Metal complexes: B:H.35 BCL.13: 22 residues within 4Å: Chain B: F.45 Chain C: W.23, A.26, T.27, A.30, H.34, W.45 Chain D: T.23, A.26, F.27, L.30, A.31, A.34, H.35, V.38 Ligands: BCL.2, LYC.3, BCL.7, LYC.15, HTO.20, BCL.21, DET.22 13 PLIP interactions: 5 interactions with chain D, 7 interactions with chain C, 1 interactions with chain B, Hydrophobic interactions: D:T.23, D:A.26, D:F.27, D:A.34, C:A.26, C:W.45, C:W.45, C:W.45, B:F.45 Hydrogen bonds: D:H.35, C:W.45 pi-Cation interactions: C:H.34 Metal complexes: C:H.34 BCL.14: 20 residues within 4Å: Chain C: N.2, P.3, D.6, W.10 Chain D: H.17, F.20, K.21, F.24, S.25, I.28 Chain M: W.23 Chain N: Q.19, T.22, T.23, A.26 Ligands: BCL.21, DET.23, HTO.24, BCL.76, LYC.78 12 PLIP interactions: 3 interactions with chain D, 1 interactions with chain M, 4 interactions with chain C, 4 interactions with chain N, Hydrophobic interactions: D:F.20, D:F.24, D:I.28, M:W.23, C:N.2, C:P.3, C:W.10, N:T.22, N:A.26 Metal complexes: C:D.6 Hydrogen bonds: N:Q.19, N:T.23 BCL.21: 23 residues within 4Å: Chain C: A.26, V.29, A.30, V.33, H.34, F.43 Chain D: F.24, F.27, I.28, A.31, H.35, V.38, W.44, F.45 Chain M: T.27, W.45 Ligands: BCL.13, BCL.14, LYC.15, DET.23, HTO.24, BCL.76, DET.83 12 PLIP interactions: 10 interactions with chain D, 2 interactions with chain C, Hydrophobic interactions: D:I.28, D:A.31, D:V.38, D:W.44, D:W.44, D:W.44, D:W.44, D:F.45, C:V.33, C:F.43 Hydrogen bonds: D:W.44 Metal complexes: D:H.35 BCL.26: 22 residues within 4Å: Chain E: W.23, A.26, T.27, A.30, H.34, W.45 Chain F: T.23, A.26, F.27, L.30, A.31, A.34, H.35, V.38 Chain P: F.45 Ligands: LYC.28, BCL.32, DET.33, BCL.89, LYC.90, BCL.96, HTO.99 13 PLIP interactions: 5 interactions with chain F, 1 interactions with chain P, 7 interactions with chain E, Hydrophobic interactions: F:T.23, F:A.26, F:F.27, F:A.34, P:F.45, E:A.26, E:W.45, E:W.45, E:W.45 Hydrogen bonds: F:H.35, E:W.45 pi-Cation interactions: E:H.34 Metal complexes: E:H.34 BCL.27: 19 residues within 4Å: Chain E: N.2, P.3, D.6, W.10 Chain F: H.17, F.20, K.21, F.24, S.25, I.28 Chain H: Q.19, T.22, T.23, A.26 Ligands: BCL.32, DET.34, BCL.38, LYC.40, HTO.45 11 PLIP interactions: 3 interactions with chain F, 4 interactions with chain E, 4 interactions with chain H, Hydrophobic interactions: F:F.20, F:F.24, F:I.28, E:N.2, E:P.3, E:W.10, H:T.22, H:A.26 Metal complexes: E:D.6 Hydrogen bonds: H:Q.19, H:T.23 BCL.32: 23 residues within 4Å: Chain E: A.26, V.29, A.30, V.33, H.34, F.43 Chain F: F.24, F.27, I.28, A.31, H.35, V.38, W.44, F.45 Chain G: T.27, W.45 Ligands: BCL.26, BCL.27, LYC.28, DET.34, BCL.38, HTO.45, DET.47 12 PLIP interactions: 10 interactions with chain F, 2 interactions with chain E, Hydrophobic interactions: F:I.28, F:A.31, F:V.38, F:W.44, F:W.44, F:W.44, F:W.44, F:F.45, E:V.33, E:F.43 Hydrogen bonds: F:W.44 Metal complexes: F:H.35 BCL.38: 22 residues within 4Å: Chain F: F.45 Chain G: W.23, A.26, T.27, A.30, H.34, W.45 Chain H: T.23, A.26, F.27, L.30, A.31, A.34, H.35, V.38 Ligands: BCL.27, LYC.28, BCL.32, LYC.40, HTO.45, BCL.46, DET.47 13 PLIP interactions: 5 interactions with chain H, 7 interactions with chain G, 1 interactions with chain F, Hydrophobic interactions: H:T.23, H:A.26, H:F.27, H:A.34, G:A.26, G:W.45, G:W.45, G:W.45, F:F.45 Hydrogen bonds: H:H.35, G:W.45 pi-Cation interactions: G:H.34 Metal complexes: G:H.34 BCL.39: 20 residues within 4Å: Chain G: N.2, P.3, D.6, W.10 Chain H: H.17, F.20, K.21, F.24, S.25, I.28 Chain I: W.23 Chain J: Q.19, T.22, T.23, A.26 Ligands: BCL.46, DET.48, HTO.49, BCL.51, LYC.53 12 PLIP interactions: 4 interactions with chain J, 1 interactions with chain I, 3 interactions with chain H, 4 interactions with chain G, Hydrophobic interactions: J:T.22, J:A.26, I:W.23, H:F.20, H:F.24, H:I.28, G:N.2, G:P.3, G:W.10 Hydrogen bonds: J:Q.19, J:T.23 Metal complexes: G:D.6 BCL.46: 23 residues within 4Å: Chain G: A.26, V.29, A.30, V.33, H.34, F.43 Chain H: F.24, F.27, I.28, A.31, H.35, V.38, W.44, F.45 Chain I: T.27, W.45 Ligands: BCL.38, BCL.39, LYC.40, DET.48, HTO.49, BCL.51, DET.58 12 PLIP interactions: 10 interactions with chain H, 2 interactions with chain G, Hydrophobic interactions: H:I.28, H:A.31, H:V.38, H:W.44, H:W.44, H:W.44, H:W.44, H:F.45, G:V.33, G:F.43 Hydrogen bonds: H:W.44 Metal complexes: H:H.35 BCL.51: 22 residues within 4Å: Chain H: F.45 Chain I: W.23, A.26, T.27, A.30, H.34, W.45 Chain J: T.23, A.26, F.27, L.30, A.31, A.34, H.35, V.38 Ligands: BCL.39, LYC.40, BCL.46, HTO.49, LYC.53, BCL.57, DET.58 13 PLIP interactions: 5 interactions with chain J, 1 interactions with chain H, 7 interactions with chain I, Hydrophobic interactions: J:T.23, J:A.26, J:F.27, J:A.34, H:F.45, I:A.26, I:W.45, I:W.45, I:W.45 Hydrogen bonds: J:H.35, I:W.45 pi-Cation interactions: I:H.34 Metal complexes: I:H.34 BCL.52: 19 residues within 4Å: Chain I: N.2, P.3, D.6, W.10 Chain J: H.17, F.20, K.21, F.24, S.25, I.28 Chain L: Q.19, T.22, T.23, A.26 Ligands: BCL.57, DET.59, BCL.63, LYC.65, HTO.70 11 PLIP interactions: 4 interactions with chain I, 4 interactions with chain L, 3 interactions with chain J, Hydrophobic interactions: I:N.2, I:P.3, I:W.10, L:T.22, L:A.26, J:F.20, J:F.24, J:I.28 Metal complexes: I:D.6 Hydrogen bonds: L:Q.19, L:T.23 BCL.57: 23 residues within 4Å: Chain I: A.26, V.29, A.30, V.33, H.34, F.43 Chain J: F.24, F.27, I.28, A.31, H.35, V.38, W.44, F.45 Chain K: T.27, W.45 Ligands: BCL.51, BCL.52, LYC.53, DET.59, BCL.63, HTO.70, DET.72 12 PLIP interactions: 2 interactions with chain I, 10 interactions with chain J, Hydrophobic interactions: I:V.33, I:F.43, J:I.28, J:A.31, J:V.38, J:W.44, J:W.44, J:W.44, J:W.44, J:F.45 Hydrogen bonds: J:W.44 Metal complexes: J:H.35 BCL.63: 22 residues within 4Å: Chain J: F.45 Chain K: W.23, A.26, T.27, A.30, H.34, W.45 Chain L: T.23, A.26, F.27, L.30, A.31, A.34, H.35, V.38 Ligands: BCL.52, LYC.53, BCL.57, LYC.65, HTO.70, BCL.71, DET.72 13 PLIP interactions: 7 interactions with chain K, 1 interactions with chain J, 5 interactions with chain L, Hydrophobic interactions: K:A.26, K:W.45, K:W.45, K:W.45, J:F.45, L:T.23, L:A.26, L:F.27, L:A.34 Hydrogen bonds: K:W.45, L:H.35 pi-Cation interactions: K:H.34 Metal complexes: K:H.34 BCL.64: 20 residues within 4Å: Chain A: W.23 Chain B: Q.19, T.22, T.23, A.26 Chain K: N.2, P.3, D.6, W.10 Chain L: H.17, F.20, K.21, F.24, S.25, I.28 Ligands: BCL.1, LYC.3, BCL.71, DET.73, HTO.74 12 PLIP interactions: 3 interactions with chain L, 1 interactions with chain A, 4 interactions with chain K, 4 interactions with chain B, Hydrophobic interactions: L:F.20, L:F.24, L:I.28, A:W.23, K:N.2, K:P.3, K:W.10, B:T.22, B:A.26 Metal complexes: K:D.6 Hydrogen bonds: B:Q.19, B:T.23 BCL.71: 23 residues within 4Å: Chain A: T.27, W.45 Chain K: A.26, V.29, A.30, V.33, H.34, F.43 Chain L: F.24, F.27, I.28, A.31, H.35, V.38, W.44, F.45 Ligands: BCL.1, DET.8, BCL.63, BCL.64, LYC.65, DET.73, HTO.74 12 PLIP interactions: 10 interactions with chain L, 2 interactions with chain K, Hydrophobic interactions: L:I.28, L:A.31, L:V.38, L:W.44, L:W.44, L:W.44, L:W.44, L:F.45, K:V.33, K:F.43 Hydrogen bonds: L:W.44 Metal complexes: L:H.35 BCL.76: 22 residues within 4Å: Chain D: F.45 Chain M: W.23, A.26, T.27, A.30, H.34, W.45 Chain N: T.23, A.26, F.27, L.30, A.31, A.34, H.35, V.38 Ligands: BCL.14, LYC.15, BCL.21, HTO.24, LYC.78, BCL.82, DET.83 13 PLIP interactions: 5 interactions with chain N, 7 interactions with chain M, 1 interactions with chain D, Hydrophobic interactions: N:T.23, N:A.26, N:F.27, N:A.34, M:A.26, M:W.45, M:W.45, M:W.45, D:F.45 Hydrogen bonds: N:H.35, M:W.45 pi-Cation interactions: M:H.34 Metal complexes: M:H.34 BCL.77: 19 residues within 4Å: Chain M: N.2, P.3, D.6, W.10 Chain N: H.17, F.20, K.21, F.24, S.25, I.28 Chain P: Q.19, T.22, T.23, A.26 Ligands: BCL.82, DET.84, BCL.88, LYC.90, HTO.95 11 PLIP interactions: 4 interactions with chain P, 4 interactions with chain M, 3 interactions with chain N, Hydrophobic interactions: P:T.22, P:A.26, M:N.2, M:P.3, M:W.10, N:F.20, N:F.24, N:I.28 Hydrogen bonds: P:Q.19, P:T.23 Metal complexes: M:D.6 BCL.82: 23 residues within 4Å: Chain M: A.26, V.29, A.30, V.33, H.34, F.43 Chain N: F.24, F.27, I.28, A.31, H.35, V.38, W.44, F.45 Chain O: T.27, W.45 Ligands: BCL.76, BCL.77, LYC.78, DET.84, BCL.88, HTO.95, DET.97 12 PLIP interactions: 10 interactions with chain N, 2 interactions with chain M, Hydrophobic interactions: N:I.28, N:A.31, N:V.38, N:W.44, N:W.44, N:W.44, N:W.44, N:F.45, M:V.33, M:F.43 Hydrogen bonds: N:W.44 Metal complexes: N:H.35 BCL.88: 22 residues within 4Å: Chain N: F.45 Chain O: W.23, A.26, T.27, A.30, H.34, W.45 Chain P: T.23, A.26, F.27, L.30, A.31, A.34, H.35, V.38 Ligands: BCL.77, LYC.78, BCL.82, LYC.90, HTO.95, BCL.96, DET.97 13 PLIP interactions: 7 interactions with chain O, 5 interactions with chain P, 1 interactions with chain N, Hydrophobic interactions: O:A.26, O:W.45, O:W.45, O:W.45, P:T.23, P:A.26, P:F.27, P:A.34, N:F.45 Hydrogen bonds: O:W.45, P:H.35 pi-Cation interactions: O:H.34 Metal complexes: O:H.34 BCL.89: 20 residues within 4Å: Chain E: W.23 Chain F: Q.19, T.22, T.23, A.26 Chain O: N.2, P.3, D.6, W.10 Chain P: H.17, F.20, K.21, F.24, S.25, I.28 Ligands: BCL.26, LYC.28, BCL.96, DET.98, HTO.99 12 PLIP interactions: 4 interactions with chain F, 4 interactions with chain O, 3 interactions with chain P, 1 interactions with chain E, Hydrophobic interactions: F:T.22, F:A.26, O:N.2, O:P.3, O:W.10, P:F.20, P:F.24, P:I.28, E:W.23 Hydrogen bonds: F:Q.19, F:T.23 Metal complexes: O:D.6 BCL.96: 23 residues within 4Å: Chain E: T.27, W.45 Chain O: A.26, V.29, A.30, V.33, H.34, F.43 Chain P: F.24, F.27, I.28, A.31, H.35, V.38, W.44, F.45 Ligands: BCL.26, DET.33, BCL.88, BCL.89, LYC.90, DET.98, HTO.99 12 PLIP interactions: 10 interactions with chain P, 2 interactions with chain O, Hydrophobic interactions: P:I.28, P:A.31, P:V.38, P:W.44, P:W.44, P:W.44, P:W.44, P:F.45, O:V.33, O:F.43 Hydrogen bonds: P:W.44 Metal complexes: P:H.35

8 x LYC: LYCOPENE(Non-covalent)

LYC.3: 30 residues within 4Å: Chain A: L.19, I.22, W.23, A.26, V.29, A.32, V.33, A.36 Chain B: A.15, V.16, Q.19, F.20, T.23, F.24, F.27 Chain C: T.27, A.30, I.31, H.34, L.38, W.45 Chain K: K.8, I.9, L.11, V.12 Chain L: L.5 Ligands: BCL.1, BCL.7, BCL.13, BCL.64 19 PLIP interactions: 3 interactions with chain C, 5 interactions with chain A, 8 interactions with chain B, 3 interactions with chain K Hydrophobic interactions: C:A.30, C:H.34, C:L.38, A:I.22, A:W.23, A:A.26, A:V.29, A:V.33, B:A.15, B:V.16, B:Q.19, B:F.20, B:F.20, B:F.20, B:F.24, B:F.24, K:I.9, K:L.11, K:V.12 LYC.15: 30 residues within 4Å: Chain A: K.8, I.9, L.11, V.12 Chain B: L.5 Chain C: L.19, I.22, W.23, A.26, V.29, A.32, V.33, A.36 Chain D: A.15, V.16, Q.19, F.20, T.23, F.24, F.27 Chain M: T.27, A.30, I.31, H.34, L.38, W.45 Ligands: BCL.2, BCL.13, BCL.21, BCL.76 19 PLIP interactions: 8 interactions with chain D, 5 interactions with chain C, 3 interactions with chain M, 3 interactions with chain A Hydrophobic interactions: D:A.15, D:V.16, D:Q.19, D:F.20, D:F.20, D:F.20, D:F.24, D:F.24, C:I.22, C:W.23, C:A.26, C:V.29, C:V.33, M:A.30, M:H.34, M:L.38, A:I.9, A:L.11, A:V.12 LYC.28: 30 residues within 4Å: Chain E: L.19, I.22, W.23, A.26, V.29, A.32, V.33, A.36 Chain F: A.15, V.16, Q.19, F.20, T.23, F.24, F.27 Chain G: T.27, A.30, I.31, H.34, L.38, W.45 Chain O: K.8, I.9, L.11, V.12 Chain P: L.5 Ligands: BCL.26, BCL.32, BCL.38, BCL.89 19 PLIP interactions: 8 interactions with chain F, 5 interactions with chain E, 3 interactions with chain O, 3 interactions with chain G Hydrophobic interactions: F:A.15, F:V.16, F:Q.19, F:F.20, F:F.20, F:F.20, F:F.24, F:F.24, E:I.22, E:W.23, E:A.26, E:V.29, E:V.33, O:I.9, O:L.11, O:V.12, G:A.30, G:H.34, G:L.38 LYC.40: 30 residues within 4Å: Chain E: K.8, I.9, L.11, V.12 Chain F: L.5 Chain G: L.19, I.22, W.23, A.26, V.29, A.32, V.33, A.36 Chain H: A.15, V.16, Q.19, F.20, T.23, F.24, F.27 Chain I: T.27, A.30, I.31, H.34, L.38, W.45 Ligands: BCL.27, BCL.38, BCL.46, BCL.51 19 PLIP interactions: 8 interactions with chain H, 5 interactions with chain G, 3 interactions with chain I, 3 interactions with chain E Hydrophobic interactions: H:A.15, H:V.16, H:Q.19, H:F.20, H:F.20, H:F.20, H:F.24, H:F.24, G:I.22, G:W.23, G:A.26, G:V.29, G:V.33, I:A.30, I:H.34, I:L.38, E:I.9, E:L.11, E:V.12 LYC.53: 30 residues within 4Å: Chain G: K.8, I.9, L.11, V.12 Chain H: L.5 Chain I: L.19, I.22, W.23, A.26, V.29, A.32, V.33, A.36 Chain J: A.15, V.16, Q.19, F.20, T.23, F.24, F.27 Chain K: T.27, A.30, I.31, H.34, L.38, W.45 Ligands: BCL.39, BCL.51, BCL.57, BCL.63 19 PLIP interactions: 3 interactions with chain G, 5 interactions with chain I, 3 interactions with chain K, 8 interactions with chain J Hydrophobic interactions: G:I.9, G:L.11, G:V.12, I:I.22, I:W.23, I:A.26, I:V.29, I:V.33, K:A.30, K:H.34, K:L.38, J:A.15, J:V.16, J:Q.19, J:F.20, J:F.20, J:F.20, J:F.24, J:F.24 LYC.65: 30 residues within 4Å: Chain A: T.27, A.30, I.31, H.34, L.38, W.45 Chain I: K.8, I.9, L.11, V.12 Chain J: L.5 Chain K: L.19, I.22, W.23, A.26, V.29, A.32, V.33, A.36 Chain L: A.15, V.16, Q.19, F.20, T.23, F.24, F.27 Ligands: BCL.1, BCL.52, BCL.63, BCL.71 19 PLIP interactions: 8 interactions with chain L, 3 interactions with chain A, 5 interactions with chain K, 3 interactions with chain I Hydrophobic interactions: L:A.15, L:V.16, L:Q.19, L:F.20, L:F.20, L:F.20, L:F.24, L:F.24, A:A.30, A:H.34, A:L.38, K:I.22, K:W.23, K:A.26, K:V.29, K:V.33, I:I.9, I:L.11, I:V.12 LYC.78: 30 residues within 4Å: Chain C: K.8, I.9, L.11, V.12 Chain D: L.5 Chain M: L.19, I.22, W.23, A.26, V.29, A.32, V.33, A.36 Chain N: A.15, V.16, Q.19, F.20, T.23, F.24, F.27 Chain O: T.27, A.30, I.31, H.34, L.38, W.45 Ligands: BCL.14, BCL.76, BCL.82, BCL.88 19 PLIP interactions: 3 interactions with chain O, 5 interactions with chain M, 8 interactions with chain N, 3 interactions with chain C Hydrophobic interactions: O:A.30, O:H.34, O:L.38, M:I.22, M:W.23, M:A.26, M:V.29, M:V.33, N:A.15, N:V.16, N:Q.19, N:F.20, N:F.20, N:F.20, N:F.24, N:F.24, C:I.9, C:L.11, C:V.12 LYC.90: 30 residues within 4Å: Chain E: T.27, A.30, I.31, H.34, L.38, W.45 Chain M: K.8, I.9, L.11, V.12 Chain N: L.5 Chain O: L.19, I.22, W.23, A.26, V.29, A.32, V.33, A.36 Chain P: A.15, V.16, Q.19, F.20, T.23, F.24, F.27 Ligands: BCL.26, BCL.77, BCL.88, BCL.96 19 PLIP interactions: 5 interactions with chain O, 8 interactions with chain P, 3 interactions with chain E, 3 interactions with chain M Hydrophobic interactions: O:I.22, O:W.23, O:A.26, O:V.29, O:V.33, P:A.15, P:V.16, P:Q.19, P:F.20, P:F.20, P:F.20, P:F.24, P:F.24, E:A.30, E:H.34, E:L.38, M:I.9, M:L.11, M:V.12

24 x DET: UNDECYLAMINE-N,N-DIMETHYL-N-OXIDE(Non-covalent)

DET.4: 7 residues within 4Å: Chain A: V.28, A.32, A.39 Ligands: HTO.5, DET.16, HTO.17, DET.66 Ligand excluded by PLIP DET.8: 7 residues within 4Å: Chain A: K.52 Chain B: A.34, V.38, W.41 Chain L: F.45 Ligands: BCL.1, BCL.71 Ligand excluded by PLIP DET.9: 6 residues within 4Å: Chain B: H.35, W.39, W.44 Ligands: BCL.2, BCL.7, HTO.20 Ligand excluded by PLIP DET.16: 7 residues within 4Å: Chain C: V.28, A.32, A.39 Ligands: DET.4, HTO.17, DET.79, HTO.80 Ligand excluded by PLIP DET.22: 7 residues within 4Å: Chain B: F.45 Chain C: K.52 Chain D: A.34, V.38, W.41 Ligands: BCL.7, BCL.13 Ligand excluded by PLIP DET.23: 6 residues within 4Å: Chain D: H.35, W.39, W.44 Ligands: BCL.14, BCL.21, HTO.24 Ligand excluded by PLIP DET.29: 7 residues within 4Å: Chain E: V.28, A.32, A.39 Ligands: HTO.30, DET.41, HTO.42, DET.91 Ligand excluded by PLIP DET.33: 7 residues within 4Å: Chain E: K.52 Chain F: A.34, V.38, W.41 Chain P: F.45 Ligands: BCL.26, BCL.96 Ligand excluded by PLIP DET.34: 6 residues within 4Å: Chain F: H.35, W.39, W.44 Ligands: BCL.27, BCL.32, HTO.45 Ligand excluded by PLIP DET.41: 7 residues within 4Å: Chain G: V.28, A.32, A.39 Ligands: DET.29, HTO.42, DET.54, HTO.55 Ligand excluded by PLIP DET.47: 7 residues within 4Å: Chain F: F.45 Chain G: K.52 Chain H: A.34, V.38, W.41 Ligands: BCL.32, BCL.38 Ligand excluded by PLIP DET.48: 6 residues within 4Å: Chain H: H.35, W.39, W.44 Ligands: BCL.39, BCL.46, HTO.49 Ligand excluded by PLIP DET.54: 7 residues within 4Å: Chain I: V.28, A.32, A.39 Ligands: DET.41, HTO.55, DET.66, HTO.67 Ligand excluded by PLIP DET.58: 7 residues within 4Å: Chain H: F.45 Chain I: K.52 Chain J: A.34, V.38, W.41 Ligands: BCL.46, BCL.51 Ligand excluded by PLIP DET.59: 6 residues within 4Å: Chain J: H.35, W.39, W.44 Ligands: BCL.52, BCL.57, HTO.70 Ligand excluded by PLIP DET.66: 7 residues within 4Å: Chain K: V.28, A.32, A.39 Ligands: DET.4, HTO.5, DET.54, HTO.67 Ligand excluded by PLIP DET.72: 7 residues within 4Å: Chain J: F.45 Chain K: K.52 Chain L: A.34, V.38, W.41 Ligands: BCL.57, BCL.63 Ligand excluded by PLIP DET.73: 6 residues within 4Å: Chain L: H.35, W.39, W.44 Ligands: BCL.64, BCL.71, HTO.74 Ligand excluded by PLIP DET.79: 7 residues within 4Å: Chain M: V.28, A.32, A.39 Ligands: DET.16, HTO.80, DET.91, HTO.92 Ligand excluded by PLIP DET.83: 7 residues within 4Å: Chain D: F.45 Chain M: K.52 Chain N: A.34, V.38, W.41 Ligands: BCL.21, BCL.76 Ligand excluded by PLIP DET.84: 6 residues within 4Å: Chain N: H.35, W.39, W.44 Ligands: BCL.77, BCL.82, HTO.95 Ligand excluded by PLIP DET.91: 7 residues within 4Å: Chain O: V.28, A.32, A.39 Ligands: DET.29, HTO.30, DET.79, HTO.92 Ligand excluded by PLIP DET.97: 7 residues within 4Å: Chain N: F.45 Chain O: K.52 Chain P: A.34, V.38, W.41 Ligands: BCL.82, BCL.88 Ligand excluded by PLIP DET.98: 6 residues within 4Å: Chain P: H.35, W.39, W.44 Ligands: BCL.89, BCL.96, HTO.99 Ligand excluded by PLIP

44 x HTO: HEPTANE-1,2,3-TRIOL(Non-covalent)(Covalent)(Non-functional Binders)

HTO.5: 6 residues within 4Å: Chain A: A.35, L.38 Chain K: A.32, A.39 Ligands: DET.4, DET.66 Ligand excluded by PLIP HTO.6: 5 residues within 4Å: Chain A: T.17, W.18 Chain C: T.17 Ligands: HTO.19, HTO.69 Ligand excluded by PLIP HTO.10: 6 residues within 4Å: Chain A: K.4, Y.7 Chain B: I.14, H.17, D.18, K.21 Ligand excluded by PLIP HTO.11: 5 residues within 4Å: Chain A: P.41, G.42 Chain C: A.47, A.50, A.51 Ligand excluded by PLIP HTO.12: 5 residues within 4Å: Chain C: I.24, V.25 Chain M: I.24 Ligands: HTO.18, HTO.68 Ligand excluded by PLIP HTO.17: 6 residues within 4Å: Chain A: A.32, A.39 Chain C: A.35, L.38 Ligands: DET.4, DET.16 Ligand excluded by PLIP HTO.18: 5 residues within 4Å: Chain M: I.24, V.25 Chain O: I.24 Ligands: HTO.12, HTO.87 Ligand excluded by PLIP HTO.19: 5 residues within 4Å: Chain C: T.17, W.18 Chain M: T.17 Ligands: HTO.6, HTO.81 Ligand excluded by PLIP HTO.20: 4 residues within 4Å: Ligands: BCL.2, BCL.7, DET.9, BCL.13 Ligand excluded by PLIP HTO.24: 4 residues within 4Å: Ligands: BCL.14, BCL.21, DET.23, BCL.76 Ligand excluded by PLIP HTO.25: 6 residues within 4Å: Chain C: K.4, Y.7 Chain D: I.14, H.17, D.18, K.21 Ligand excluded by PLIP HTO.30: 6 residues within 4Å: Chain E: A.35, L.38 Chain O: A.32, A.39 Ligands: DET.29, DET.91 Ligand excluded by PLIP HTO.31: 5 residues within 4Å: Chain E: T.17, W.18 Chain G: T.17 Ligands: HTO.44, HTO.94 Ligand excluded by PLIP HTO.35: 6 residues within 4Å: Chain E: K.4, Y.7 Chain F: I.14, H.17, D.18, K.21 Ligand excluded by PLIP HTO.36: 5 residues within 4Å: Chain E: P.41, G.42 Chain G: A.47, A.50, A.51 Ligand excluded by PLIP HTO.37: 5 residues within 4Å: Chain G: I.24, V.25 Chain I: I.24 Ligands: HTO.43, HTO.93 Ligand excluded by PLIP HTO.42: 6 residues within 4Å: Chain E: A.32, A.39 Chain G: A.35, L.38 Ligands: DET.29, DET.41 Ligand excluded by PLIP HTO.43: 5 residues within 4Å: Chain I: I.24, V.25 Chain K: I.24 Ligands: HTO.37, HTO.62 Ligand excluded by PLIP HTO.44: 5 residues within 4Å: Chain G: T.17, W.18 Chain I: T.17 Ligands: HTO.31, HTO.56 Ligand excluded by PLIP HTO.45: 4 residues within 4Å: Ligands: BCL.27, BCL.32, DET.34, BCL.38 Ligand excluded by PLIP HTO.49: 4 residues within 4Å: Ligands: BCL.39, BCL.46, DET.48, BCL.51 Ligand excluded by PLIP HTO.50: 6 residues within 4Å: Chain G: K.4, Y.7 Chain H: I.14, H.17, D.18, K.21 Ligand excluded by PLIP HTO.55: 6 residues within 4Å: Chain G: A.32, A.39 Chain I: A.35, L.38 Ligands: DET.41, DET.54 Ligand excluded by PLIP HTO.56: 5 residues within 4Å: Chain I: T.17, W.18 Chain K: T.17 Ligands: HTO.44, HTO.69 Ligand excluded by PLIP HTO.60: 6 residues within 4Å: Chain I: K.4, Y.7 Chain J: I.14, H.17, D.18, K.21 Ligand excluded by PLIP HTO.61: 5 residues within 4Å: Chain I: P.41, G.42 Chain K: A.47, A.50, A.51 Ligand excluded by PLIP HTO.62: 5 residues within 4Å: Chain A: I.24 Chain K: I.24, V.25 Ligands: HTO.43, HTO.68 Ligand excluded by PLIP HTO.67: 6 residues within 4Å: Chain I: A.32, A.39 Chain K: A.35, L.38 Ligands: DET.54, DET.66 Ligand excluded by PLIP HTO.68: 5 residues within 4Å: Chain A: I.24, V.25 Chain C: I.24 Ligands: HTO.12, HTO.62 Ligand excluded by PLIP HTO.69: 5 residues within 4Å: Chain A: T.17 Chain K: T.17, W.18 Ligands: HTO.6, HTO.56 Ligand excluded by PLIP HTO.70: 4 residues within 4Å: Ligands: BCL.52, BCL.57, DET.59, BCL.63 Ligand excluded by PLIP HTO.74: 4 residues within 4Å: Ligands: BCL.1, BCL.64, BCL.71, DET.73 Ligand excluded by PLIP HTO.75: 6 residues within 4Å: Chain K: K.4, Y.7 Chain L: I.14, H.17, D.18, K.21 Ligand excluded by PLIP HTO.80: 6 residues within 4Å: Chain C: A.32, A.39 Chain M: A.35, L.38 Ligands: DET.16, DET.79 Ligand excluded by PLIP HTO.81: 5 residues within 4Å: Chain M: T.17, W.18 Chain O: T.17 Ligands: HTO.19, HTO.94 Ligand excluded by PLIP HTO.85: 6 residues within 4Å: Chain M: K.4, Y.7 Chain N: I.14, H.17, D.18, K.21 Ligand excluded by PLIP HTO.86: 5 residues within 4Å: Chain M: P.41, G.42 Chain O: A.47, A.50, A.51 Ligand excluded by PLIP HTO.87: 5 residues within 4Å: Chain E: I.24 Chain O: I.24, V.25 Ligands: HTO.18, HTO.93 Ligand excluded by PLIP HTO.92: 6 residues within 4Å: Chain M: A.32, A.39 Chain O: A.35, L.38 Ligands: DET.79, DET.91 Ligand excluded by PLIP HTO.93: 5 residues within 4Å: Chain E: I.24, V.25 Chain G: I.24 Ligands: HTO.37, HTO.87 Ligand excluded by PLIP HTO.94: 5 residues within 4Å: Chain E: T.17 Chain O: T.17, W.18 Ligands: HTO.31, HTO.81 Ligand excluded by PLIP HTO.95: 4 residues within 4Å: Ligands: BCL.77, BCL.82, DET.84, BCL.88 Ligand excluded by PLIP HTO.99: 4 residues within 4Å: Ligands: BCL.26, BCL.89, BCL.96, DET.98 Ligand excluded by PLIP HTO.100: 6 residues within 4Å: Chain O: K.4, Y.7 Chain P: I.14, H.17, D.18, K.21 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koepke, J. et al., The crystal structure of the light-harvesting complex II (B800-850) from Rhodospirillum molischianum. Structure (1996)

Release Date

1997-06-05

Peptides

LIGHT HARVESTING COMPLEX II: ACEGIKMO
LIGHT HARVESTING COMPLEX II: BDFHJLNP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

C
J

E
G

G
J

I
G

K
J

M
G

O
J

B
H

D
K

F
H

H
K

J
H

L
K

N
H

P
K

Membrane

We predict this structure to be a membrane protein.
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LIGHT HARVESTING COMPLEX II

LIGHT HARVESTING COMPLEX II

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