SMTL ID : 1lgr.1

INTERACTIONS OF NUCLEOTIDES WITH FULLY UNADENYLYLATED GLUTAMINE SYNTHETASE FROM SALMONELLA TYPHIMURIUM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

homo-12-mer

Ligands

24 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 3 residues within 4Å: Chain A: E.131, E.212, E.220 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.131, A:E.212, A:E.220 MN.2: 5 residues within 4Å: Chain A: E.129, H.269, R.344, E.357, R.359 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.129, A:E.129, A:E.357 MN.4: 3 residues within 4Å: Chain B: E.131, E.212, E.220 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.131, B:E.212, B:E.220 MN.5: 5 residues within 4Å: Chain B: E.129, H.269, R.344, E.357, R.359 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.129, B:E.129, B:E.357 MN.7: 3 residues within 4Å: Chain C: E.131, E.212, E.220 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.131, C:E.212, C:E.220 MN.8: 5 residues within 4Å: Chain C: E.129, H.269, R.344, E.357, R.359 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.129, C:E.129, C:E.357 MN.10: 3 residues within 4Å: Chain D: E.131, E.212, E.220 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:E.131, D:E.212, D:E.220 MN.11: 5 residues within 4Å: Chain D: E.129, H.269, R.344, E.357, R.359 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:E.129, D:E.129, D:E.357 MN.13: 3 residues within 4Å: Chain E: E.131, E.212, E.220 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:E.131, E:E.212, E:E.220 MN.14: 5 residues within 4Å: Chain E: E.129, H.269, R.344, E.357, R.359 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:E.129, E:E.129, E:E.357 MN.16: 3 residues within 4Å: Chain F: E.131, E.212, E.220 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:E.131, F:E.212, F:E.220 MN.17: 5 residues within 4Å: Chain F: E.129, H.269, R.344, E.357, R.359 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:E.129, F:E.129, F:E.357 MN.19: 3 residues within 4Å: Chain G: E.131, E.212, E.220 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:E.131, G:E.212, G:E.220 MN.20: 5 residues within 4Å: Chain G: E.129, H.269, R.344, E.357, R.359 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:E.129, G:E.129, G:E.357 MN.22: 3 residues within 4Å: Chain H: E.131, E.212, E.220 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:E.131, H:E.212, H:E.220 MN.23: 5 residues within 4Å: Chain H: E.129, H.269, R.344, E.357, R.359 3 PLIP interactions: 3 interactions with chain H Metal complexes: H:E.129, H:E.129, H:E.357 MN.25: 3 residues within 4Å: Chain I: E.131, E.212, E.220 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:E.131, I:E.212, I:E.220 MN.26: 5 residues within 4Å: Chain I: E.129, H.269, R.344, E.357, R.359 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:E.129, I:E.129, I:E.357 MN.28: 3 residues within 4Å: Chain J: E.131, E.212, E.220 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:E.131, J:E.212, J:E.220 MN.29: 5 residues within 4Å: Chain J: E.129, H.269, R.344, E.357, R.359 3 PLIP interactions: 3 interactions with chain J Metal complexes: J:E.129, J:E.129, J:E.357 MN.31: 3 residues within 4Å: Chain K: E.131, E.212, E.220 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:E.131, K:E.212, K:E.220 MN.32: 5 residues within 4Å: Chain K: E.129, H.269, R.344, E.357, R.359 3 PLIP interactions: 3 interactions with chain K Metal complexes: K:E.129, K:E.129, K:E.357 MN.34: 3 residues within 4Å: Chain L: E.131, E.212, E.220 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:E.131, L:E.212, L:E.220 MN.35: 5 residues within 4Å: Chain L: E.129, H.269, R.344, E.357, R.359 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:E.129, L:E.129, L:E.357

12 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.3: 9 residues within 4Å: Chain A: L.125, G.127, E.207, T.223, F.225, H.271, M.272, S.273, R.355 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:E.207, A:T.223, A:S.273, A:S.273, A:R.355 Salt bridges: A:H.271, A:R.355 pi-Cation interactions: A:R.355 AMP.6: 9 residues within 4Å: Chain B: L.125, G.127, E.207, T.223, F.225, H.271, M.272, S.273, R.355 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:E.207, B:T.223, B:S.273, B:S.273, B:R.355 Salt bridges: B:H.271, B:R.355 pi-Cation interactions: B:R.355 AMP.9: 9 residues within 4Å: Chain C: L.125, G.127, E.207, T.223, F.225, H.271, M.272, S.273, R.355 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:E.207, C:T.223, C:S.273, C:S.273, C:R.355 Salt bridges: C:H.271, C:R.355 pi-Cation interactions: C:R.355 AMP.12: 9 residues within 4Å: Chain D: L.125, G.127, E.207, T.223, F.225, H.271, M.272, S.273, R.355 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:E.207, D:T.223, D:S.273, D:S.273, D:R.355 Salt bridges: D:H.271, D:R.355 pi-Cation interactions: D:R.355 AMP.15: 9 residues within 4Å: Chain E: L.125, G.127, E.207, T.223, F.225, H.271, M.272, S.273, R.355 9 PLIP interactions: 9 interactions with chain E Hydrogen bonds: E:E.207, E:T.223, E:F.225, E:S.273, E:S.273, E:R.355 Salt bridges: E:H.271, E:R.355 pi-Cation interactions: E:R.355 AMP.18: 9 residues within 4Å: Chain F: L.125, G.127, E.207, T.223, F.225, H.271, M.272, S.273, R.355 8 PLIP interactions: 8 interactions with chain F Hydrogen bonds: F:E.207, F:T.223, F:S.273, F:S.273, F:R.355 Salt bridges: F:H.271, F:R.355 pi-Cation interactions: F:R.355 AMP.21: 9 residues within 4Å: Chain G: L.125, G.127, E.207, T.223, F.225, H.271, M.272, S.273, R.355 8 PLIP interactions: 8 interactions with chain G Hydrogen bonds: G:E.207, G:T.223, G:S.273, G:S.273, G:R.355 Salt bridges: G:H.271, G:R.355 pi-Cation interactions: G:R.355 AMP.24: 9 residues within 4Å: Chain H: L.125, G.127, E.207, T.223, F.225, H.271, M.272, S.273, R.355 9 PLIP interactions: 9 interactions with chain H Hydrogen bonds: H:E.207, H:T.223, H:F.225, H:S.273, H:S.273, H:R.355 Salt bridges: H:H.271, H:R.355 pi-Cation interactions: H:R.355 AMP.27: 9 residues within 4Å: Chain I: L.125, G.127, E.207, T.223, F.225, H.271, M.272, S.273, R.355 9 PLIP interactions: 9 interactions with chain I Hydrogen bonds: I:E.207, I:T.223, I:F.225, I:S.273, I:S.273, I:R.355 Salt bridges: I:H.271, I:R.355 pi-Cation interactions: I:R.355 AMP.30: 9 residues within 4Å: Chain J: L.125, G.127, E.207, T.223, F.225, H.271, M.272, S.273, R.355 8 PLIP interactions: 8 interactions with chain J Hydrogen bonds: J:E.207, J:T.223, J:S.273, J:S.273, J:R.355 Salt bridges: J:H.271, J:R.355 pi-Cation interactions: J:R.355 AMP.33: 9 residues within 4Å: Chain K: L.125, G.127, E.207, T.223, F.225, H.271, M.272, S.273, R.355 8 PLIP interactions: 8 interactions with chain K Hydrogen bonds: K:E.207, K:T.223, K:S.273, K:S.273, K:R.355 Salt bridges: K:H.271, K:R.355 pi-Cation interactions: K:R.355 AMP.36: 9 residues within 4Å: Chain L: L.125, G.127, E.207, T.223, F.225, H.271, M.272, S.273, R.355 8 PLIP interactions: 8 interactions with chain L Hydrogen bonds: L:E.207, L:T.223, L:S.273, L:S.273, L:R.355 Salt bridges: L:H.271, L:R.355 pi-Cation interactions: L:R.355

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liaw, S.H. et al., Interactions of nucleotides with fully unadenylylated glutamine synthetase from Salmonella typhimurium. Biochemistry (1994)

Release Date

1994-11-30

Peptides

GLUTAMINE SYNTHETASE: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

GLUTAMINE SYNTHETASE

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