SMTL ID : 1ljo.1

CRYSTAL STRUCTURE OF AN SM-LIKE PROTEIN (AF-SM2) FROM ARCHAEOGLOBUS FULGIDUS AT 1.95A RESOLUTION

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-hexamer

Ligands

6 x CD: CADMIUM ION(Non-functional Binders)

CD.1: 5 residues within 4Å: Ligands: CD.5, CD.9, CD.13, CD.17, CD.21 No protein-ligand interaction detected (PLIP) CD.5: 5 residues within 4Å: Ligands: CD.1, CD.9, CD.13, CD.17, CD.21 No protein-ligand interaction detected (PLIP) CD.9: 5 residues within 4Å: Ligands: CD.1, CD.5, CD.13, CD.17, CD.21 No protein-ligand interaction detected (PLIP) CD.13: 5 residues within 4Å: Ligands: CD.1, CD.5, CD.9, CD.17, CD.21 No protein-ligand interaction detected (PLIP) CD.17: 5 residues within 4Å: Ligands: CD.1, CD.5, CD.9, CD.13, CD.21 No protein-ligand interaction detected (PLIP) CD.21: 5 residues within 4Å: Ligands: CD.1, CD.5, CD.9, CD.13, CD.17 No protein-ligand interaction detected (PLIP)

18 x ACY: ACETIC ACID(Non-functional Binders)

ACY.2: 4 residues within 4Å: Chain A: E.26, Q.28, K.51, G.52 Ligand excluded by PLIP ACY.3: 3 residues within 4Å: Chain A: K.55, R.57, S.58 Ligand excluded by PLIP ACY.4: 2 residues within 4Å: Chain A: G.60, E.61 Ligand excluded by PLIP ACY.6: 4 residues within 4Å: Chain B: E.26, Q.28, K.51, G.52 Ligand excluded by PLIP ACY.7: 3 residues within 4Å: Chain B: K.55, R.57, S.58 Ligand excluded by PLIP ACY.8: 2 residues within 4Å: Chain B: G.60, E.61 Ligand excluded by PLIP ACY.10: 4 residues within 4Å: Chain C: E.26, Q.28, K.51, G.52 Ligand excluded by PLIP ACY.11: 3 residues within 4Å: Chain C: K.55, R.57, S.58 Ligand excluded by PLIP ACY.12: 2 residues within 4Å: Chain C: G.60, E.61 Ligand excluded by PLIP ACY.14: 4 residues within 4Å: Chain D: E.26, Q.28, K.51, G.52 Ligand excluded by PLIP ACY.15: 3 residues within 4Å: Chain D: K.55, R.57, S.58 Ligand excluded by PLIP ACY.16: 2 residues within 4Å: Chain D: G.60, E.61 Ligand excluded by PLIP ACY.18: 4 residues within 4Å: Chain E: E.26, Q.28, K.51, G.52 Ligand excluded by PLIP ACY.19: 3 residues within 4Å: Chain E: K.55, R.57, S.58 Ligand excluded by PLIP ACY.20: 2 residues within 4Å: Chain E: G.60, E.61 Ligand excluded by PLIP ACY.22: 4 residues within 4Å: Chain F: E.26, Q.28, K.51, G.52 Ligand excluded by PLIP ACY.23: 3 residues within 4Å: Chain F: K.55, R.57, S.58 Ligand excluded by PLIP ACY.24: 2 residues within 4Å: Chain F: G.60, E.61 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Toro, I. et al., Archaeal Sm proteins form heptameric and hexameric complexes: crystal structures of the Sm1 and Sm2 proteins from the hyperthermophile Archaeoglobus fulgidus. J.Mol.Biol. (2002)

Release Date

2002-07-03

Peptides

Archaeal Sm-like protein AF-Sm2: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Archaeal Sm-like protein AF-Sm2