- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 10 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
NA.11: 2 residues within 4Å:- Chain A: N.175
- Chain B: N.175
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.175
NA.12: 2 residues within 4Å:- Chain C: N.175
- Chain D: N.175
4 PLIP interactions:2 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:N.175
- Water bridges: D:N.177, C:N.177, C:N.177
- 4 x DER: D-4-PHOSPHOERYTHRONIC ACID(Non-covalent)
DER.13: 15 residues within 4Å:- Chain A: T.28, G.29, S.30, T.31, D.85, G.86, A.87, D.88, K.98, G.99, R.100, G.101, E.107, K.125
- Ligands: CL.1
18 PLIP interactions:18 interactions with chain A- Hydrogen bonds: A:S.30, A:T.31, A:T.31, A:G.86, A:D.88, A:G.99, A:G.101, A:E.107
- Water bridges: A:S.30, A:T.32, A:T.32, A:A.87, A:R.100, A:R.100
- Salt bridges: A:K.7, A:K.98, A:R.100, A:K.125
DER.14: 15 residues within 4Å:- Chain B: T.28, G.29, S.30, T.31, D.85, G.86, A.87, D.88, K.98, G.99, R.100, G.101, E.107, K.125
- Ligands: CL.2
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:S.30, B:T.31, B:T.31, B:D.85, B:G.86, B:G.99, B:R.100, B:G.101
- Water bridges: B:G.29, B:T.32, B:A.87
- Salt bridges: B:K.7, B:K.98, B:K.125
DER.15: 15 residues within 4Å:- Chain C: T.28, G.29, S.30, T.31, D.85, G.86, A.87, D.88, K.98, G.99, R.100, G.101, E.107, K.125
- Ligands: CL.3
21 PLIP interactions:21 interactions with chain C- Hydrogen bonds: C:S.30, C:T.31, C:G.86, C:D.88, C:G.99, C:G.101, C:E.107
- Water bridges: C:K.7, C:S.30, C:T.32, C:T.32, C:A.87, C:R.100, C:R.100, C:R.100, C:K.125, C:K.125
- Salt bridges: C:K.7, C:K.98, C:R.100, C:K.125
DER.16: 15 residues within 4Å:- Chain D: T.28, G.29, S.30, T.31, D.85, G.86, A.87, D.88, K.98, G.99, R.100, G.101, E.107, K.125
- Ligands: CL.4
18 PLIP interactions:18 interactions with chain D- Hydrogen bonds: D:S.30, D:T.31, D:T.31, D:G.86, D:D.88, D:G.99, D:G.101, D:E.107
- Water bridges: D:G.29, D:S.30, D:T.32, D:A.87, D:A.87, D:D.88, D:K.125
- Salt bridges: D:K.7, D:K.98, D:K.125
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ishikawa, K. et al., A Hyperthermostable D-Ribose-5-Phosphate Isomerase from Pyrococcus horikoshii Characterization and Three-Dimensional Structure. STRUCTURE (2002)
- Release Date
- 2002-07-03
- Peptides
- D-Ribose-5-Phosphate Isomerase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-tetramer
- Ligands
- 10 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 4 x DER: D-4-PHOSPHOERYTHRONIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ishikawa, K. et al., A Hyperthermostable D-Ribose-5-Phosphate Isomerase from Pyrococcus horikoshii Characterization and Three-Dimensional Structure. STRUCTURE (2002)
- Release Date
- 2002-07-03
- Peptides
- D-Ribose-5-Phosphate Isomerase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D