- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.53 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x NAG- FUC: alpha-L-fucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 11 x SO4: SULFATE ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
PLP.12: 14 residues within 4Å:- Chain A: G.131, V.132, T.133, Y.165, T.203, N.207, D.225, V.227, Y.228, T.248, S.250, K.251, R.259
- Chain B: Y.92
13 PLIP interactions:12 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:Y.165, A:T.203, A:K.251
- Hydrogen bonds: A:V.132, A:T.133, A:N.207, A:T.248, A:S.250, A:S.250, B:Y.92
- Salt bridges: A:K.251, A:R.259
- pi-Stacking: A:Y.165
PLP.21: 15 residues within 4Å:- Chain A: Y.92
- Chain B: G.131, V.132, T.133, Y.165, T.203, N.207, D.225, V.227, Y.228, T.248, S.250, K.251, R.259
- Ligands: DHA.22
14 PLIP interactions:13 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:Y.165, B:T.203, B:V.227, B:K.251
- Hydrogen bonds: B:V.132, B:T.133, B:T.133, B:N.207, B:Y.228, B:S.250, B:S.250, A:Y.92
- Salt bridges: B:R.259
- pi-Stacking: B:Y.165
- 2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
EPE.13: 11 residues within 4Å:- Chain A: Y.92, T.279, E.283
- Chain B: S.63, G.64, Y.165, V.167, E.170, Q.388, R.401
- Ligands: DHA.22
10 PLIP interactions:8 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:S.63, B:G.64, B:E.170, B:Y.363, B:Q.388
- Water bridges: B:R.401, B:R.401
- Salt bridges: B:R.401, A:E.283, A:E.283
EPE.14: 12 residues within 4Å:- Chain A: S.63, G.64, Y.165, V.167, E.170, Y.363, Q.388, R.401
- Chain B: Y.92, F.93, T.279, E.283
13 PLIP interactions:11 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:G.64, A:E.170, A:Y.363, A:Y.363, A:Q.388
- Water bridges: A:E.170, A:N.207, A:R.401, A:R.401, A:R.401
- Salt bridges: A:R.401, B:E.283, B:E.283
- 1 x DHA: 2-AMINO-ACRYLIC ACID(Non-covalent)
DHA.22: 11 residues within 4Å:- Chain A: Y.92
- Chain B: G.64, Y.165, N.207, Y.228, K.251, Y.363, Q.388, R.401
- Ligands: EPE.13, PLP.21
10 PLIP interactions:1 interactions with chain A, 9 interactions with chain B- Hydrophobic interactions: A:Y.92
- Hydrogen bonds: B:G.64, B:N.207, B:Y.228, B:Y.228, B:Q.388
- Water bridges: B:R.401, B:R.401
- Salt bridges: B:K.251, B:R.401
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kuettner, E.B. et al., The active principle of garlic at atomic resolution. J.Biol.Chem. (2002)
- Release Date
- 2002-12-11
- Peptides
- ALLIIN LYASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.53 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-3)]2-acetamido-2-deoxy-beta-D-glucopyranose
- 2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 1 x NAG- FUC: alpha-L-fucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
- 11 x SO4: SULFATE ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- 2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)
- 1 x DHA: 2-AMINO-ACRYLIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kuettner, E.B. et al., The active principle of garlic at atomic resolution. J.Biol.Chem. (2002)
- Release Date
- 2002-12-11
- Peptides
- ALLIIN LYASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B