- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
PLP.2: 16 residues within 4Å:- Chain A: G.84, E.85, T.86, I.89, F.108, C.153, N.157, D.185, A.187, F.188, S.213, T.215, K.216, R.224, L.225
- Chain B: Y.56
15 PLIP interactions:14 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:F.108, A:N.157, A:A.187, A:K.216
- Hydrogen bonds: A:E.85, A:T.86, A:T.86, A:N.157, A:S.213, A:T.215, A:T.215, B:Y.56
- Salt bridges: A:K.216, A:R.224
- pi-Stacking: A:F.108
PLP.6: 16 residues within 4Å:- Chain A: Y.56
- Chain B: G.84, E.85, T.86, I.89, F.108, C.153, N.157, D.185, A.187, F.188, S.213, T.215, K.216, R.224, L.225
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:F.108, B:N.157, B:A.187, B:K.216
- Hydrogen bonds: B:E.85, B:T.86, B:N.157, B:S.213, B:T.215, B:T.215, B:K.216
- Salt bridges: B:K.216, B:R.224
- pi-Stacking: B:F.108
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 4 residues within 4Å:- Chain A: D.190, R.212, S.213, Y.227
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:R.212, A:Y.227
- Water bridges: A:E.186, A:D.190
EDO.4: 5 residues within 4Å:- Chain A: V.104, L.152, C.153, N.156, P.163
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:C.153
- Water bridges: A:N.156, A:N.156
EDO.7: 4 residues within 4Å:- Chain B: D.190, R.212, S.213, Y.227
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:D.190, B:R.212, B:Y.227, B:Y.227
- Water bridges: B:E.186, B:D.190
EDO.8: 5 residues within 4Å:- Chain B: V.104, L.152, C.153, N.156, P.163
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:C.153
- Water bridges: B:N.156, B:N.156
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
-
Cheong, C.G. et al., Three-dimensional structure of the L-threonine-O-3-phosphate decarboxylase (CobD) enzyme from Salmonella enterica. Biochemistry (2002)
- Release Date
- 2002-05-01
- Peptides
- L-threonine-O-3-phosphate decarboxylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x PO4: PHOSPHATE ION(Non-functional Binders)
- 2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
-
Cheong, C.G. et al., Three-dimensional structure of the L-threonine-O-3-phosphate decarboxylase (CobD) enzyme from Salmonella enterica. Biochemistry (2002)
- Release Date
- 2002-05-01
- Peptides
- L-threonine-O-3-phosphate decarboxylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A