- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-octamer
- Ligands
- 16 x FE2: FE (II) ION(Non-covalent)
- 16 x BP6: 2',6'-DICHLORO-BIPHENYL-2,6-DIOL(Non-covalent)
BP6.3: 15 residues within 4Å:- Chain A: H.145, V.147, I.172, M.174, F.186, H.194, F.201, H.209, H.240, N.242, Y.249, E.259, P.279
- Ligands: FE2.1, P6G.5
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:I.172, A:F.186, A:F.186, A:F.201, A:P.279
- pi-Stacking: A:H.240
BP6.4: 9 residues within 4Å:- Chain A: L.203, P.204, K.205, I.207, H.208, S.254, G.255, V.256, E.257
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:L.203, A:P.204, A:K.205
- Hydrogen bonds: A:E.257
- Water bridges: A:G.255, A:E.257
- Halogen bonds: A:S.254
BP6.8: 15 residues within 4Å:- Chain B: H.145, V.147, I.172, M.174, F.186, H.194, F.201, H.209, H.240, N.242, Y.249, E.259, P.279
- Ligands: FE2.6, P6G.10
6 PLIP interactions:6 interactions with chain B- Hydrophobic interactions: B:I.172, B:F.186, B:F.186, B:F.201, B:P.279
- pi-Stacking: B:H.240
BP6.9: 9 residues within 4Å:- Chain B: L.203, P.204, K.205, I.207, H.208, S.254, G.255, V.256, E.257
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:L.203, B:P.204, B:K.205
- Hydrogen bonds: B:E.257
- Water bridges: B:G.255, B:E.257
- Halogen bonds: B:S.254
BP6.13: 15 residues within 4Å:- Chain C: H.145, V.147, I.172, M.174, F.186, H.194, F.201, H.209, H.240, N.242, Y.249, E.259, P.279
- Ligands: FE2.11, P6G.15
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:I.172, C:F.186, C:F.186, C:F.201, C:P.279
- pi-Stacking: C:H.240
BP6.14: 9 residues within 4Å:- Chain C: L.203, P.204, K.205, I.207, H.208, S.254, G.255, V.256, E.257
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:L.203, C:P.204, C:K.205
- Hydrogen bonds: C:E.257
- Water bridges: C:G.255, C:E.257
- Halogen bonds: C:S.254
BP6.18: 15 residues within 4Å:- Chain D: H.145, V.147, I.172, M.174, F.186, H.194, F.201, H.209, H.240, N.242, Y.249, E.259, P.279
- Ligands: FE2.16, P6G.20
6 PLIP interactions:6 interactions with chain D- Hydrophobic interactions: D:I.172, D:F.186, D:F.186, D:F.201, D:P.279
- pi-Stacking: D:H.240
BP6.19: 9 residues within 4Å:- Chain D: L.203, P.204, K.205, I.207, H.208, S.254, G.255, V.256, E.257
7 PLIP interactions:7 interactions with chain D- Hydrophobic interactions: D:L.203, D:P.204, D:K.205
- Hydrogen bonds: D:E.257
- Water bridges: D:G.255, D:E.257
- Halogen bonds: D:S.254
BP6.23: 15 residues within 4Å:- Chain E: H.145, V.147, I.172, M.174, F.186, H.194, F.201, H.209, H.240, N.242, Y.249, E.259, P.279
- Ligands: FE2.21, P6G.25
7 PLIP interactions:7 interactions with chain E- Hydrophobic interactions: E:I.172, E:F.186, E:F.186, E:F.201, E:P.279
- Hydrogen bonds: E:Y.249
- pi-Stacking: E:H.240
BP6.24: 9 residues within 4Å:- Chain E: L.203, P.204, K.205, I.207, H.208, S.254, G.255, V.256, E.257
6 PLIP interactions:6 interactions with chain E- Hydrophobic interactions: E:L.203, E:P.204, E:K.205
- Water bridges: E:G.255, E:E.257
- Halogen bonds: E:S.254
BP6.28: 15 residues within 4Å:- Chain F: H.145, V.147, I.172, M.174, F.186, H.194, F.201, H.209, H.240, N.242, Y.249, E.259, P.279
- Ligands: FE2.26, P6G.30
7 PLIP interactions:7 interactions with chain F- Hydrophobic interactions: F:I.172, F:F.186, F:F.186, F:F.201, F:P.279
- Hydrogen bonds: F:Y.249
- pi-Stacking: F:H.240
BP6.29: 9 residues within 4Å:- Chain F: L.203, P.204, K.205, I.207, H.208, S.254, G.255, V.256, E.257
6 PLIP interactions:6 interactions with chain F- Hydrophobic interactions: F:L.203, F:P.204, F:K.205
- Water bridges: F:G.255, F:E.257
- Halogen bonds: F:S.254
BP6.33: 15 residues within 4Å:- Chain G: H.145, V.147, I.172, M.174, F.186, H.194, F.201, H.209, H.240, N.242, Y.249, E.259, P.279
- Ligands: FE2.31, P6G.35
7 PLIP interactions:7 interactions with chain G- Hydrophobic interactions: G:I.172, G:F.186, G:F.186, G:F.201, G:P.279
- Hydrogen bonds: G:Y.249
- pi-Stacking: G:H.240
BP6.34: 9 residues within 4Å:- Chain G: L.203, P.204, K.205, I.207, H.208, S.254, G.255, V.256, E.257
6 PLIP interactions:6 interactions with chain G- Hydrophobic interactions: G:L.203, G:P.204, G:K.205
- Water bridges: G:G.255, G:E.257
- Halogen bonds: G:S.254
BP6.38: 15 residues within 4Å:- Chain H: H.145, V.147, I.172, M.174, F.186, H.194, F.201, H.209, H.240, N.242, Y.249, E.259, P.279
- Ligands: FE2.36, P6G.40
7 PLIP interactions:7 interactions with chain H- Hydrophobic interactions: H:I.172, H:F.186, H:F.186, H:F.201, H:P.279
- Hydrogen bonds: H:Y.249
- pi-Stacking: H:H.240
BP6.39: 9 residues within 4Å:- Chain H: L.203, P.204, K.205, I.207, H.208, S.254, G.255, V.256, E.257
6 PLIP interactions:6 interactions with chain H- Hydrophobic interactions: H:L.203, H:P.204, H:K.205
- Water bridges: H:G.255, H:E.257
- Halogen bonds: H:S.254
- 8 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)
P6G.5: 9 residues within 4Å:- Chain A: M.176, F.201, L.203, H.208, S.235, Y.249, E.257, H.284
- Ligands: BP6.3
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.257
P6G.10: 9 residues within 4Å:- Chain B: M.176, F.201, L.203, H.208, S.235, Y.249, E.257, H.284
- Ligands: BP6.8
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.257
P6G.15: 9 residues within 4Å:- Chain C: M.176, F.201, L.203, H.208, S.235, Y.249, E.257, H.284
- Ligands: BP6.13
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:E.257
P6G.20: 9 residues within 4Å:- Chain D: M.176, F.201, L.203, H.208, S.235, Y.249, E.257, H.284
- Ligands: BP6.18
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:E.257
P6G.25: 9 residues within 4Å:- Chain E: M.176, F.201, L.203, H.208, S.235, Y.249, E.257, H.284
- Ligands: BP6.23
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:E.257
P6G.30: 9 residues within 4Å:- Chain F: M.176, F.201, L.203, H.208, S.235, Y.249, E.257, H.284
- Ligands: BP6.28
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:E.257
P6G.35: 9 residues within 4Å:- Chain G: M.176, F.201, L.203, H.208, S.235, Y.249, E.257, H.284
- Ligands: BP6.33
1 PLIP interactions:1 interactions with chain G- Hydrogen bonds: G:E.257
P6G.40: 9 residues within 4Å:- Chain H: M.176, F.201, L.203, H.208, S.235, Y.249, E.257, H.284
- Ligands: BP6.38
1 PLIP interactions:1 interactions with chain H- Hydrogen bonds: H:E.257
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dai, S. et al., Identification and analysis of a bottleneck in PCB biodegradation. Nat.Struct.Biol. (2002)
- Release Date
- 2002-11-27
- Peptides
- BIPHENYL-2,3-DIOL 1,2-DIOXYGENASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-octamer
- Ligands
- 16 x FE2: FE (II) ION(Non-covalent)
- 16 x BP6: 2',6'-DICHLORO-BIPHENYL-2,6-DIOL(Non-covalent)
- 8 x P6G: HEXAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Dai, S. et al., Identification and analysis of a bottleneck in PCB biodegradation. Nat.Struct.Biol. (2002)
- Release Date
- 2002-11-27
- Peptides
- BIPHENYL-2,3-DIOL 1,2-DIOXYGENASE: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A