SMTL ID : 1ll2.1

Crystal Structure of Rabbit Muscle Glycogenin Complexed with UDP-glucose and Manganese

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.102, D.104, H.212 Ligands: UPG.2 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.102, A:D.104, A:D.104, A:H.212 MN.3: 4 residues within 4Å: Chain B: D.102, D.104, H.212 Ligands: UPG.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.102, B:D.104, B:D.104, B:H.212

2 x UPG: URIDINE-5'-DIPHOSPHATE-GLUCOSE(Non-covalent)

UPG.2: 20 residues within 4Å: Chain A: L.9, T.10, T.11, N.12, Y.15, V.82, D.102, A.103, D.104, D.125, N.133, S.134, G.135, D.163, Q.164, H.212, L.214, G.215, K.218 Ligands: MN.1 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:L.9, A:T.11, A:T.11, A:T.11, A:N.12, A:Y.15, A:Y.15, A:D.102, A:A.103, A:D.104, A:N.133, A:Q.164, A:Q.164, A:G.215 Salt bridges: A:H.212, A:K.218, A:K.218 pi-Stacking: A:Y.15 UPG.4: 20 residues within 4Å: Chain B: L.9, T.10, T.11, N.12, Y.15, V.82, D.102, A.103, D.104, D.125, N.133, S.134, G.135, D.163, Q.164, H.212, L.214, G.215, K.218 Ligands: MN.3 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:L.9, B:T.11, B:T.11, B:T.11, B:N.12, B:Y.15, B:Y.15, B:D.102, B:A.103, B:D.104, B:N.133, B:Q.164, B:Q.164, B:G.215 Salt bridges: B:H.212, B:K.218, B:K.218 pi-Stacking: B:Y.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gibbons, B.J. et al., Crystal structure of the autocatalytic initiator of glycogen biosynthesis, glycogenin. J.Mol.Biol. (2002)

Release Date

2002-05-15

Peptides

GLYCOGENIN-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

GLYCOGENIN-1

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