SMTL ID : 1lo7.1

X-ray structure of 4-Hydroxybenzoyl CoA Thioesterase complexed with 4-hydroxyphenacyl CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

4 x 4CO: 4-HYDROXYPHENACYL COENZYME A(Non-covalent)

4CO.1: 30 residues within 4Å: Chain A: D.32, W.47, G.58, T.59, P.60, I.61, V.62, S.63, R.88, R.89, K.90, S.91, I.116, R.117, V.118, L.127, R.128, A.129 Chain B: D.17, I.21, V.22, W.23, Y.24, S.67, F.68, V.69, C.70, T.71 Chain D: F.13 Ligands: EDO.5 23 PLIP interactions: 17 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:P.60, A:V.62, A:L.127 Hydrogen bonds: A:T.59, A:I.61, A:S.63, A:R.89, A:K.90, A:S.91, A:S.91, A:A.129, B:D.17, B:Y.24, B:S.67, B:F.68, B:T.71 Water bridges: A:K.90, A:K.90, A:S.91, A:S.91, B:F.68 Salt bridges: A:K.90, A:K.90 4CO.4: 30 residues within 4Å: Chain A: D.17, I.21, V.22, W.23, Y.24, S.67, F.68, V.69, C.70, T.71 Chain B: D.32, W.47, G.58, T.59, P.60, I.61, V.62, S.63, R.88, R.89, K.90, S.91, I.116, R.117, V.118, L.127, R.128, A.129 Chain C: F.13 Ligands: EDO.2 23 PLIP interactions: 17 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:P.60, B:V.62, B:L.127 Hydrogen bonds: B:T.59, B:I.61, B:S.63, B:R.89, B:K.90, B:S.91, B:S.91, B:A.129, A:D.17, A:Y.24, A:S.67, A:F.68, A:T.71 Water bridges: B:K.90, B:K.90, B:S.91, B:S.91, A:F.68 Salt bridges: B:K.90, B:K.90 4CO.7: 30 residues within 4Å: Chain B: F.13 Chain C: D.32, W.47, G.58, T.59, P.60, I.61, V.62, S.63, R.88, R.89, K.90, S.91, I.116, R.117, V.118, L.127, R.128, A.129 Chain D: D.17, I.21, V.22, W.23, Y.24, S.67, F.68, V.69, C.70, T.71 Ligands: EDO.11 23 PLIP interactions: 6 interactions with chain D, 17 interactions with chain C Hydrogen bonds: D:Y.24, D:S.67, D:F.68, D:T.71, C:T.59, C:I.61, C:S.63, C:R.89, C:K.90, C:S.91, C:S.91, C:A.129 Water bridges: D:Y.27, D:F.68, C:K.90, C:K.90, C:S.91, C:S.91 Hydrophobic interactions: C:P.60, C:V.62, C:L.127 Salt bridges: C:K.90, C:K.90 4CO.10: 30 residues within 4Å: Chain A: F.13 Chain C: D.17, I.21, V.22, W.23, Y.24, S.67, F.68, V.69, C.70, T.71 Chain D: D.32, W.47, G.58, T.59, P.60, I.61, V.62, S.63, R.88, R.89, K.90, S.91, I.116, R.117, V.118, L.127, R.128, A.129 Ligands: EDO.8 23 PLIP interactions: 17 interactions with chain D, 6 interactions with chain C Hydrophobic interactions: D:P.60, D:V.62, D:L.127 Hydrogen bonds: D:T.59, D:I.61, D:S.63, D:R.89, D:K.90, D:S.91, D:S.91, D:A.129, C:Y.24, C:S.67, C:F.68, C:T.71 Water bridges: D:K.90, D:K.90, D:S.91, D:S.91, C:Y.27, C:F.68 Salt bridges: D:K.90, D:K.90

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: V.69 Ligands: 4CO.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.69 EDO.3: 4 residues within 4Å: Chain A: N.65, A.66, S.67, R.112 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.65 Water bridges: A:N.65, A:S.67 EDO.5: 2 residues within 4Å: Chain B: V.69 Ligands: 4CO.1 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.69 EDO.6: 4 residues within 4Å: Chain B: N.65, A.66, S.67, R.112 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.65 Water bridges: B:N.65, B:S.67 EDO.8: 2 residues within 4Å: Chain C: V.69 Ligands: 4CO.10 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:V.69 EDO.9: 4 residues within 4Å: Chain C: N.65, A.66, S.67, R.112 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.65 Water bridges: C:N.65, C:S.67 EDO.11: 2 residues within 4Å: Chain D: V.69 Ligands: 4CO.7 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:V.69 EDO.12: 4 residues within 4Å: Chain D: N.65, A.66, S.67, R.112 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.65 Water bridges: D:N.65, D:S.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thoden, J.B. et al., X-ray crystallographic analyses of inhibitor and substrate complexes of wild-type and mutant 4-hydroxybenzoyl-CoA thioesterase. J.Biol.Chem. (2002)

Release Date

2002-05-13

Peptides

4-hydroxybenzoyl-CoA Thioesterase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

4-hydroxybenzoyl-CoA Thioesterase

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