SMTL ID : 1lol.1

Crystal structure of orotidine monophosphate decarboxylase complex with XMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x BU2: 1,3-BUTANEDIOL(Non-covalent)

BU2.1: 7 residues within 4Å: Chain A: K.42, D.70, K.72, I.96, L.123, V.155 Ligands: XMP.2 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.96, A:L.123 Water bridges: A:K.72 BU2.3: 9 residues within 4Å: Chain B: K.42, D.70, K.72, I.96, L.123, V.155, G.156, P.157 Ligands: XMP.4 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:I.96 Hydrogen bonds: B:K.42

2 x XMP: XANTHOSINE-5'-MONOPHOSPHATE(Non-covalent)

XMP.2: 15 residues within 4Å: Chain A: A.18, D.20, K.42, D.70, M.126, S.127, H.128, P.157, S.158, P.180, V.201, G.202, R.203 Chain B: I.76 Ligands: BU2.1 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:D.20, A:K.42, A:S.127, A:S.127, A:S.158, A:G.202, A:R.203, A:R.203 Water bridges: A:M.19, A:D.70, A:K.72, A:S.158, A:S.204 Salt bridges: A:R.203 XMP.4: 13 residues within 4Å: Chain A: I.76 Chain B: A.18, D.20, K.42, D.70, S.127, P.157, S.158, P.180, V.201, G.202, R.203 Ligands: BU2.3 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:D.20, B:K.42, B:D.70, B:S.127, B:P.157, B:G.202, B:R.203 Water bridges: B:D.20, B:R.203, B:S.204 Salt bridges: B:R.203

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, N. et al., Crystal structures of inhibitor complexes reveal an alternate binding mode in orotidine-5'-monophosphate decarboxylase. J.Biol.Chem. (2002)

Release Date

2002-08-07

Peptides

orotidine 5'-monophosphate decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

orotidine 5'-monophosphate decarboxylase

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