- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
K.3: 6 residues within 4Å:- Chain A: P.18, G.19, S.21, N.333
- Chain D: D.137, F.139
5 PLIP interactions:2 interactions with chain D, 3 interactions with chain A- Metal complexes: D:D.137, D:F.139, A:G.19, A:S.21, A:N.333
K.10: 7 residues within 4Å:- Chain A: D.137, F.139
- Chain B: P.18, G.19, S.21, N.333
- Ligands: TRS.6
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Metal complexes: B:G.19, B:S.21, B:N.333, A:D.137, A:F.139
K.16: 6 residues within 4Å:- Chain B: D.137, F.139
- Chain C: P.18, G.19, S.21, N.333
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain C- Metal complexes: B:D.137, B:F.139, C:G.19, C:S.21, C:N.333
K.21: 6 residues within 4Å:- Chain C: D.137, F.139
- Chain D: P.18, G.19, S.21, N.333
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain C- Metal complexes: D:G.19, D:S.21, D:N.333, C:D.137, C:F.139
- 4 x IMP: INOSINIC ACID(Non-covalent)
IMP.4: 21 residues within 4Å:- Chain A: A.56, M.58, G.189, S.190, I.191, C.192, D.231, G.232, G.233, M.252, L.253, G.254, R.255, Y.278, G.280, E.281, G.282, S.283, E.304, G.305
- Ligands: TAD.5
17 PLIP interactions:17 interactions with chain A- Hydrogen bonds: A:S.190, A:S.190, A:D.231, A:G.233, A:G.254, A:R.255, A:Y.278, A:E.281, A:G.282, A:S.283, A:E.304
- Water bridges: A:N.164, A:K.183, A:G.189, A:G.232, A:I.234, A:Y.256
IMP.11: 19 residues within 4Å:- Chain B: A.56, M.58, G.189, S.190, I.191, C.192, D.231, G.232, G.233, M.252, L.253, G.254, R.255, Y.278, G.280, E.281, G.282, S.283
- Ligands: TAD.12
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:S.190, B:S.190, B:D.231, B:G.233, B:G.254, B:R.255, B:E.281, B:G.282
- Water bridges: B:N.164, B:K.183, B:G.232, B:I.234, B:I.234, B:Y.256
IMP.17: 19 residues within 4Å:- Chain C: A.56, M.58, G.189, S.190, I.191, C.192, D.231, G.232, G.233, M.252, L.253, G.254, R.255, Y.278, G.280, E.281, G.282, S.283
- Ligands: TAD.18
15 PLIP interactions:15 interactions with chain C- Hydrogen bonds: C:S.190, C:S.190, C:D.231, C:G.233, C:G.254, C:R.255, C:E.281, C:G.282, C:S.283
- Water bridges: C:K.183, C:G.189, C:G.232, C:G.232, C:I.234, C:Y.256
IMP.22: 21 residues within 4Å:- Chain D: A.56, M.58, G.189, S.190, I.191, C.192, D.231, G.232, G.233, M.252, L.253, G.254, R.255, Y.278, G.280, E.281, G.282, S.283, E.304, G.305
- Ligands: TAD.23
18 PLIP interactions:18 interactions with chain D- Hydrogen bonds: D:S.190, D:S.190, D:D.231, D:G.233, D:G.254, D:R.255, D:Y.278, D:E.281, D:G.282, D:E.304
- Water bridges: D:N.164, D:G.189, D:D.231, D:G.232, D:I.234, D:I.234, D:I.234, D:Y.256
- 4 x TAD: BETA-METHYLENE-THIAZOLE-4-CARBOXYAMIDE-ADENINE DINUCLEOTIDE(Non-covalent)
TAD.5: 16 residues within 4Å:- Chain A: T.113, R.114, D.134, S.135, S.136, W.142, N.164, G.185, I.186, G.187, E.281, G.282, E.304
- Ligands: BOG.1, IMP.4, TRS.6
22 PLIP interactions:22 interactions with chain A- Hydrogen bonds: A:T.113, A:T.113, A:R.114, A:R.114, A:D.134, A:S.136, A:N.164, A:G.185, A:G.187
- Water bridges: A:T.113, A:D.134, A:S.135, A:S.135, A:S.135, A:S.135, A:S.135, A:S.136, A:K.183, A:K.183, A:E.304
- pi-Stacking: A:W.142
- pi-Cation interactions: A:R.114
TAD.12: 13 residues within 4Å:- Chain B: T.113, R.114, D.134, S.135, S.136, W.142, N.164, G.185, I.186, G.187, E.281, G.282
- Ligands: IMP.11
19 PLIP interactions:18 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:T.113, B:T.113, B:R.114, B:R.114, B:D.134, B:S.136, B:N.164, B:G.185, B:G.187
- Water bridges: B:D.134, B:D.134, B:S.135, B:D.137, B:K.183, B:K.198, C:C.25
- pi-Stacking: B:W.142, B:W.142
- pi-Cation interactions: B:R.114
TAD.18: 13 residues within 4Å:- Chain C: T.113, R.114, D.134, S.135, S.136, W.142, N.164, G.185, I.186, G.187, E.281, G.282
- Ligands: IMP.17
16 PLIP interactions:16 interactions with chain C- Hydrogen bonds: C:T.113, C:T.113, C:R.114, C:D.134, C:S.136, C:N.164, C:G.185, C:G.187
- Water bridges: C:T.113, C:S.135, C:S.135, C:K.183, C:D.231
- pi-Stacking: C:W.142
- pi-Cation interactions: C:R.114, C:R.114
TAD.23: 15 residues within 4Å:- Chain D: T.113, R.114, D.134, S.135, S.136, W.142, N.164, G.185, I.186, G.187, R.195, E.281, G.282, E.304
- Ligands: IMP.22
19 PLIP interactions:19 interactions with chain D- Hydrogen bonds: D:T.113, D:R.114, D:R.114, D:D.134, D:S.136, D:N.164, D:G.185, D:G.187, D:R.195, D:R.195
- Water bridges: D:T.113, D:T.113, D:T.113, D:K.183, D:D.231
- pi-Stacking: D:W.142, D:W.142, D:W.142
- pi-Cation interactions: D:R.114
- 12 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.6: 8 residues within 4Å:- Chain A: S.135, D.137, S.140, W.142
- Chain B: S.21, N.333
- Ligands: TAD.5, K.10
7 PLIP interactions:3 interactions with chain B, 4 interactions with chain A- Hydrogen bonds: B:S.21, B:N.333, A:S.135, A:D.137, A:D.137, A:S.140
- Water bridges: B:N.333
TRS.7: 6 residues within 4Å:- Chain A: K.38, A.175, D.176, G.178, Y.218, I.224
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.176
- Water bridges: A:K.38
TRS.8: 5 residues within 4Å:- Chain A: V.212, A.213, N.216
- Chain D: A.1, Y.3
7 PLIP interactions:2 interactions with chain A, 5 interactions with chain D- Hydrogen bonds: A:V.212, A:N.216, D:A.1, D:A.1
- Water bridges: D:A.1, D:A.1, D:A.1
TRS.9: 7 residues within 4Å:- Chain A: P.35, F.39, Q.43, Q.44, S.45, N.48, P.340
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Q.43, A:S.45, A:N.48, A:N.48
- Water bridges: A:N.48
TRS.13: 7 residues within 4Å:- Chain B: D.237, Y.256, R.259, F.260, N.319, A.322, S.323
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Y.256, B:R.259, B:R.259
- Water bridges: B:D.237, B:D.237
TRS.14: 5 residues within 4Å:- Chain A: A.1, Y.3
- Chain B: V.212, A.213, N.216
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:A.1, A:A.1, B:N.216
- Water bridges: A:Y.3, B:I.209, B:A.213, B:Q.343
TRS.15: 6 residues within 4Å:- Chain B: P.35, F.39, Q.43, Q.44, S.45, N.48
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Q.43, B:Q.44, B:S.45, B:N.48, B:N.48
TRS.19: 6 residues within 4Å:- Chain C: D.237, Y.256, R.259, N.319, A.322, S.323
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:D.237, C:R.259, C:R.259, C:N.319, C:S.323
TRS.20: 5 residues within 4Å:- Chain B: A.1, Y.3
- Chain C: V.212, A.213, N.216
8 PLIP interactions:4 interactions with chain B, 4 interactions with chain C- Hydrogen bonds: B:A.1, B:A.1, B:A.1, C:V.212, C:N.216
- Water bridges: B:Y.3, C:A.213, C:K.217
TRS.24: 7 residues within 4Å:- Chain D: D.237, Y.256, R.259, F.260, N.319, A.322, S.323
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:R.259, D:R.259, D:N.319
- Water bridges: D:D.237, D:D.237
TRS.25: 4 residues within 4Å:- Chain C: A.1, Y.3
- Chain D: V.212, N.216
5 PLIP interactions:1 interactions with chain D, 4 interactions with chain C- Hydrogen bonds: D:N.216, C:A.1, C:A.1
- Water bridges: C:A.1, C:A.1
TRS.26: 6 residues within 4Å:- Chain D: Y.4, N.5, E.6, P.7, R.202, T.206
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:N.5, D:N.5, D:P.7
- Water bridges: D:R.202, D:D.210
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gan, L. et al., Crystal structure of a ternary complex of Tritrichomonas foetus inosine 5'-monophosphate dehydrogenase: NAD+ orients the active site loop for catalysis. Biochemistry (2003)
- Release Date
- 2003-07-07
- Peptides
- INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
- 4 x IMP: INOSINIC ACID(Non-covalent)
- 4 x TAD: BETA-METHYLENE-THIAZOLE-4-CARBOXYAMIDE-ADENINE DINUCLEOTIDE(Non-covalent)
- 12 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gan, L. et al., Crystal structure of a ternary complex of Tritrichomonas foetus inosine 5'-monophosphate dehydrogenase: NAD+ orients the active site loop for catalysis. Biochemistry (2003)
- Release Date
- 2003-07-07
- Peptides
- INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D