- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.2: 23 residues within 4Å:- Chain A: I.13, G.14, G.16, A.17, V.18, E.38, D.39, I.40, T.82, A.83, G.84, P.85, R.86, I.103, I.107, I.123, T.124, N.125, L.152, H.180, T.236, I.240
- Ligands: OXM.3
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:V.18, A:I.123, A:I.240
- Hydrogen bonds: A:A.17, A:V.18, A:G.19, A:I.40, A:G.84, A:P.85, A:I.123, A:N.125, A:N.125
- Salt bridges: A:R.86, A:R.86
NAD.5: 23 residues within 4Å:- Chain B: I.13, G.14, G.16, A.17, V.18, E.38, D.39, I.40, T.82, A.83, G.84, P.85, R.86, I.103, I.107, I.123, T.124, N.125, L.152, H.180, T.236, I.240
- Ligands: OXM.6
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:V.18, B:I.123, B:I.240
- Hydrogen bonds: B:A.17, B:V.18, B:G.19, B:I.40, B:G.84, B:P.85, B:I.123, B:N.125, B:N.125
- Salt bridges: B:R.86, B:R.86
NAD.8: 23 residues within 4Å:- Chain C: I.13, G.14, G.16, A.17, V.18, E.38, D.39, I.40, T.82, A.83, G.84, P.85, R.86, I.103, I.107, I.123, T.124, N.125, L.152, H.180, T.236, I.240
- Ligands: OXM.9
14 PLIP interactions:14 interactions with chain C- Hydrophobic interactions: C:V.18, C:I.123, C:I.240
- Hydrogen bonds: C:A.17, C:V.18, C:G.19, C:I.40, C:G.84, C:P.85, C:I.123, C:N.125, C:N.125
- Salt bridges: C:R.86, C:R.86
NAD.11: 23 residues within 4Å:- Chain D: I.13, G.14, G.16, A.17, V.18, E.38, D.39, I.40, T.82, A.83, G.84, P.85, R.86, I.103, I.107, I.123, T.124, N.125, L.152, H.180, T.236, I.240
- Ligands: OXM.12
14 PLIP interactions:14 interactions with chain D- Hydrophobic interactions: D:V.18, D:I.123, D:I.240
- Hydrogen bonds: D:A.17, D:V.18, D:G.19, D:I.40, D:G.84, D:P.85, D:I.123, D:N.125, D:N.125
- Salt bridges: D:R.86, D:R.86
- 4 x OXM: OXAMIC ACID(Non-covalent)
OXM.3: 9 residues within 4Å:- Chain A: Q.87, R.93, N.125, L.152, R.156, H.180, A.226, T.236
- Ligands: NAD.2
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:N.125, A:T.236, A:T.236, A:T.236
- Water bridges: A:R.156
- Salt bridges: A:R.93, A:R.156, A:H.180
OXM.6: 9 residues within 4Å:- Chain B: Q.87, R.93, N.125, L.152, R.156, H.180, A.226, T.236
- Ligands: NAD.5
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:N.125, B:T.236, B:T.236
- Water bridges: B:R.156
- Salt bridges: B:R.93, B:R.156, B:H.180
OXM.9: 9 residues within 4Å:- Chain C: Q.87, R.93, N.125, L.152, R.156, H.180, A.226, T.236
- Ligands: NAD.8
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:N.125, C:T.236, C:T.236
- Water bridges: C:R.156
- Salt bridges: C:R.93, C:R.156, C:H.180
OXM.12: 9 residues within 4Å:- Chain D: Q.87, R.93, N.125, L.152, R.156, H.180, A.226, T.236
- Ligands: NAD.11
8 PLIP interactions:8 interactions with chain D- Hydrogen bonds: D:N.125, D:T.236, D:T.236, D:T.236
- Water bridges: D:R.156
- Salt bridges: D:R.93, D:R.156, D:H.180
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Iwata, S. et al., T and R states in the crystals of bacterial L-lactate dehydrogenase reveal the mechanism for allosteric control. Nat.Struct.Biol. (1994)
- Release Date
- 1995-03-31
- Peptides
- L-LACTATE DEHYDROGENASE (T- AND R- STATE TETRAMER COMPLEX): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
RB
RC
RD
R
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x FBP: 1,6-di-O-phosphono-beta-D-fructofuranose(Non-covalent)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x OXM: OXAMIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Iwata, S. et al., T and R states in the crystals of bacterial L-lactate dehydrogenase reveal the mechanism for allosteric control. Nat.Struct.Biol. (1994)
- Release Date
- 1995-03-31
- Peptides
- L-LACTATE DEHYDROGENASE (T- AND R- STATE TETRAMER COMPLEX): ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
RB
RC
RD
R