- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NGA- A2G: 2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
CA.2: 4 residues within 4Å:- Chain A: D.125, L.127, N.129, D.133
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.125, A:D.125, A:L.127, A:D.133
CA.6: 4 residues within 4Å:- Chain B: D.125, L.127, N.129, D.133
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.125, B:D.125, B:L.127, B:D.133
CA.10: 4 residues within 4Å:- Chain C: D.125, L.127, N.129, D.133
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.125, C:D.125, C:L.127, C:D.133
CA.14: 4 residues within 4Å:- Chain D: D.125, L.127, N.129, D.133
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:D.125, D:D.125, D:L.127, D:D.133
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.3: 5 residues within 4Å:- Chain A: E.123, D.125, D.133, H.138, S.148
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:E.123, A:D.125, A:D.133, A:H.138
MN.7: 5 residues within 4Å:- Chain B: E.123, D.125, D.133, H.138, S.148
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.123, B:D.125, B:D.133, B:H.138
MN.11: 5 residues within 4Å:- Chain C: E.123, D.125, D.133, H.138, S.148
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:E.123, C:D.125, C:D.133, C:H.138
MN.15: 5 residues within 4Å:- Chain D: E.123, D.125, D.133, H.138, S.148
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:E.123, D:D.125, D:D.133, D:H.138
- 4 x ADE: ADENINE(Non-covalent)
ADE.4: 10 residues within 4Å:- Chain A: L.165, I.166, T.167, V.176, S.178, I.189, L.244
- Chain B: L.165, S.178
- Ligands: ADE.8
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:T.167, A:T.167, B:S.178, B:S.178
ADE.8: 10 residues within 4Å:- Chain A: L.165, S.178
- Chain B: L.165, I.166, T.167, V.176, S.178, I.189, L.244
- Ligands: ADE.4
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B- Hydrogen bonds: A:S.178, A:S.178, B:T.167, B:T.167, B:T.167
ADE.12: 10 residues within 4Å:- Chain C: L.165, I.166, T.167, V.176, S.178, I.189, L.244
- Chain D: L.165, S.178
- Ligands: ADE.16
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:T.167, C:T.167, D:S.178, D:S.178
ADE.16: 10 residues within 4Å:- Chain C: L.165, S.178
- Chain D: L.165, I.166, T.167, V.176, S.178, I.189, L.244
- Ligands: ADE.12
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:S.178, C:S.178, D:T.167, D:T.167, D:T.167
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hamelryck, T.W. et al., Carbohydrate binding, quaternary structure and a novel hydrophobic binding site in two legume lectin oligomers from Dolichos biflorus. J.Mol.Biol. (1999)
- Release Date
- 1998-12-09
- Peptides
- LECTIN: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x NGA- A2G: 2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x ADE: ADENINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hamelryck, T.W. et al., Carbohydrate binding, quaternary structure and a novel hydrophobic binding site in two legume lectin oligomers from Dolichos biflorus. J.Mol.Biol. (1999)
- Release Date
- 1998-12-09
- Peptides
- LECTIN: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A