SMTL ID : 1lua.1

Structure of methylene-tetrahydromethanopterin dehydrogenase from Methylobacterium extorquens AM1 complexed with NADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-trimer

Ligands

3 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 18 residues within 4Å: Chain A: N.96, T.101, A.126, T.128, G.129, P.130, V.131, G.150, R.151, K.155, A.195, G.196, A.197, I.198, L.200, Y.220, N.221, K.255 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:V.131 Hydrogen bonds: A:T.101, A:T.128, A:T.128, A:V.131, A:R.151, A:R.151, A:R.151, A:K.155, A:G.196, A:A.197, A:K.255 Water bridges: A:N.96, A:N.96, A:N.96, A:G.129, A:G.132, A:K.152, A:A.222 Salt bridges: A:R.151, A:K.155 pi-Cation interactions: A:R.151, A:R.151 NAP.2: 18 residues within 4Å: Chain B: N.96, T.101, A.126, T.128, G.129, P.130, V.131, G.150, R.151, K.155, A.195, G.196, A.197, I.198, L.200, Y.220, N.221, K.255 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:V.131 Hydrogen bonds: B:T.128, B:T.128, B:V.131, B:R.151, B:K.155, B:G.196, B:A.197 Water bridges: B:A.126, B:G.129, B:G.132, B:R.151, B:K.152, B:K.255 Salt bridges: B:R.151, B:K.155 pi-Cation interactions: B:R.151, B:R.151 NAP.3: 18 residues within 4Å: Chain C: N.96, T.101, A.126, T.128, G.129, P.130, V.131, G.150, R.151, K.155, A.195, G.196, A.197, I.198, L.200, Y.220, N.221, K.255 22 PLIP interactions: 22 interactions with chain C Hydrophobic interactions: C:V.131 Hydrogen bonds: C:T.128, C:T.128, C:V.131, C:R.151, C:K.155, C:G.196, C:A.197 Water bridges: C:T.128, C:G.129, C:G.132, C:R.151, C:K.152, C:K.152, C:K.152, C:K.152, C:A.222, C:K.255 Salt bridges: C:R.151, C:K.155 pi-Cation interactions: C:R.151, C:R.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ermler, U. et al., Structure of methylene-tetrahydromethanopterin dehydrogenase from methylobacterium extorquens AM1. Structure (2002)

Release Date

2002-09-11

Peptides

Methylene Tetrahydromethanopterin Dehydrogenase: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Methylene Tetrahydromethanopterin Dehydrogenase

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