SMTL ID : 1luq.1

Full Matrix Error Analysis of Streptavidin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.96 Å

Oligo State

homo-tetramer

Ligands

4 x BTN: BIOTIN(Non-covalent)

BTN.1: 17 residues within 4Å: Chain A: N.11, L.13, S.15, Y.31, V.35, G.36, N.37, A.38, W.67, A.74, S.76, T.78, W.80, W.96, L.98, D.116 Chain D: W.108 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:A.38, A:W.67, A:W.67, A:W.67, A:L.98 Hydrogen bonds: A:N.11, A:S.15, A:S.15, A:N.37, A:S.76, A:S.76, A:D.116 BTN.4: 17 residues within 4Å: Chain B: N.11, L.13, S.15, Y.31, V.35, G.36, N.37, A.38, W.67, A.74, S.76, T.78, W.80, W.96, L.98, D.116 Chain C: W.108 12 PLIP interactions: 12 interactions with chain B Hydrophobic interactions: B:A.38, B:W.67, B:W.67, B:W.67, B:L.98 Hydrogen bonds: B:S.15, B:S.15, B:Y.31, B:N.37, B:S.76, B:S.76, B:D.116 BTN.5: 17 residues within 4Å: Chain B: W.108 Chain C: N.11, L.13, S.15, Y.31, V.35, G.36, N.37, A.38, W.67, A.74, S.76, T.78, W.80, W.96, L.98, D.116 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:A.38, C:W.67, C:W.67, C:W.67, C:L.98 Hydrogen bonds: C:N.11, C:S.15, C:S.15, C:Y.31, C:N.37, C:S.76, C:S.76, C:D.116 BTN.8: 17 residues within 4Å: Chain A: W.108 Chain D: N.11, L.13, S.15, Y.31, V.35, G.36, N.37, A.38, W.67, A.74, S.76, T.78, W.80, W.96, L.98, D.116 11 PLIP interactions: 11 interactions with chain D Hydrophobic interactions: D:A.38, D:W.67, D:W.67, D:W.67, D:L.98 Hydrogen bonds: D:S.15, D:S.15, D:N.37, D:S.76, D:S.76, D:D.116

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: K.68, N.69, N.70 Chain B: D.24 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.68, A:N.70, B:D.24 Water bridges: A:K.68, A:N.69 GOL.6: 4 residues within 4Å: Chain C: K.68, N.69, N.70 Chain D: D.24 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain D Hydrogen bonds: C:K.68, C:N.70, D:D.24 Water bridges: C:K.68, C:N.69

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 5 residues within 4Å: Chain A: W.108, K.109 Chain D: V.35, G.36, N.37 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:K.109, A:K.109, D:G.36 MPD.7: 5 residues within 4Å: Chain B: V.35, G.36, N.37 Chain C: W.108, K.109 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:G.36, C:K.109, C:K.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Merritt, E.A. et al., Full Matrix Error Analysis of Streptavidin. To be Published

Release Date

2003-09-09

Peptides

Streptavidin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Streptavidin

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