SMTL ID : 1lvb.4 (4 other biounits)

CATALYTICALLY INACTIVE TOBACCO ETCH VIRUS PROTEASE COMPLEXED WITH SUBSTRATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-4-4-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 11 residues within 4Å: Chain A: R.16, D.17, Y.18, N.19, S.22, S.130, M.131 Chain C: T.125, K.126, S.127, M.128 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:Y.18, A:N.19, A:N.19, A:S.22 Water bridges: C:Q.124 GOL.2: 11 residues within 4Å: Chain A: T.125, K.126, S.127, M.128 Chain C: R.16, D.17, Y.18, N.19, S.22, S.130, M.131 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:Y.18, C:N.19, C:N.19, C:S.22 Water bridges: A:Q.124 GOL.3: 11 residues within 4Å: Chain E: R.16, D.17, Y.18, N.19, S.22, S.130, M.131 Chain G: T.125, K.126, S.127, M.128 5 PLIP interactions: 4 interactions with chain E, 1 interactions with chain G Hydrogen bonds: E:Y.18, E:N.19, E:N.19, E:S.22 Water bridges: G:Q.124 GOL.4: 11 residues within 4Å: Chain E: T.125, K.126, S.127, M.128 Chain G: R.16, D.17, Y.18, N.19, S.22, S.130, M.131 5 PLIP interactions: 4 interactions with chain G, 1 interactions with chain E Hydrogen bonds: G:Y.18, G:N.19, G:N.19, G:S.22 Water bridges: E:Q.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Phan, J. et al., Structural basis for the substrate specificity of tobacco etch virus protease. J.Biol.Chem. (2002)

Release Date

2002-11-27

Peptides

CATALYTIC DOMAIN OF THE NUCLEAR INCLUSION PROTEIN A (NIA): ACEG
OLIGOPEPTIDE SUBSTRATE FOR THE PROTEASE: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

E
A

G
B

B
C

D
D

F
C

H
D

CATALYTIC DOMAIN OF THE NUCLEAR INCLUSION PROTEIN A (NIA)

OLIGOPEPTIDE SUBSTRATE FOR THE PROTEASE

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