SMTL ID : 1lvg.1

Crystal structure of mouse guanylate kinase in complex with GMP and ADP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x K: POTASSIUM ION(Non-covalent)

K.1: 4 residues within 4Å: Chain A: S.37, Y.53, D.101 Ligands: 5GP.3 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:S.37, A:D.101, H2O.1, H2O.1, H2O.2

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 13 residues within 4Å: Chain A: P.12, S.13, G.14, A.15, G.16, K.17, S.18, T.19, R.133, R.137, N.171, D.172, L.174 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:G.14, A:A.15, A:G.16, A:K.17, A:S.18, A:T.19, A:T.19, A:R.133, A:R.133, A:N.171, A:D.172 Water bridges: A:K.17, A:K.17, A:K.17, A:S.18, A:S.18, A:S.18, A:T.19, A:R.44, A:L.174 Salt bridges: A:K.17, A:R.137, A:R.137 pi-Cation interactions: A:R.133

1 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Non-covalent)

5GP.3: 18 residues within 4Å: Chain A: G.11, K.17, S.37, R.41, R.44, Y.53, E.72, A.74, F.76, Y.81, G.82, T.83, D.101, V.102, D.103, G.106, R.148 Ligands: K.1 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:S.37, A:Y.53, A:Y.81, A:D.101, A:D.103 Water bridges: A:G.11, A:S.13, A:K.17, A:R.44, A:R.44 Salt bridges: A:R.41, A:R.44, A:E.72, A:D.103, A:R.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sekulic, N. et al., Structural characterization of the closed conformation of mouse guanylate kinase. J.Biol.Chem. (2002)

Release Date

2002-12-11

Peptides

Guanylate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Guanylate kinase