SMTL ID : 1lvl.1

THE REFINED STRUCTURE OF PSEUDOMONAS PUTIDA LIPOAMIDE DEHYDROGENASE COMPLEXED WITH NAD+ AT 2.45 ANGSTROMS RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.1: 38 residues within 4Å: Chain A: I.11, G.12, G.13, P.15, G.16, V.34, E.35, G.36, Q.37, G.41, T.42, C.43, I.46, G.47, C.48, K.52, G.116, W.117, A.118, A.141, T.142, G.143, S.144, S.161, Y.181, R.266, R.269, F.273, G.304, D.305, M.311, L.312, A.313, H.314, A.316 Chain B: H.437, P.438 Ligands: NAD.2 20 PLIP interactions: 19 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:T.42 Hydrogen bonds: A:G.13, A:G.16, A:G.36, A:T.42, A:T.42, A:T.42, A:C.43, A:K.52, A:A.118, A:A.118, A:S.144, A:Y.181, A:R.269, A:D.305, A:D.305, A:M.311, A:A.313, A:H.314, B:H.437 FAD.3: 38 residues within 4Å: Chain A: H.437, P.438 Chain B: I.11, G.12, G.13, P.15, G.16, V.34, E.35, G.36, Q.37, G.41, T.42, C.43, I.46, G.47, C.48, K.52, G.116, W.117, A.118, A.141, T.142, G.143, S.144, S.161, Y.181, R.266, R.269, F.273, G.304, D.305, M.311, L.312, A.313, H.314, A.316 Ligands: NAD.4 18 PLIP interactions: 17 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:T.42 Hydrogen bonds: B:G.13, B:G.16, B:G.36, B:T.42, B:T.42, B:C.43, B:K.52, B:A.118, B:A.118, B:S.144, B:R.269, B:D.305, B:D.305, B:M.311, B:A.313, B:H.314, A:H.437

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.2: 22 residues within 4Å: Chain A: L.149, V.177, G.178, G.180, Y.181, I.182, V.200, E.201, A.202, R.203, P.208, H.233, S.234, V.235, A.263, V.264, G.265, R.266, E.309, P.310, M.311 Ligands: FAD.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:M.311 Hydrogen bonds: A:Y.181, A:I.182, A:A.202, A:V.235, A:V.235, A:R.266, A:M.311 Water bridges: A:G.265, A:G.265 NAD.4: 22 residues within 4Å: Chain B: L.149, V.177, G.178, G.180, Y.181, I.182, V.200, E.201, A.202, R.203, P.208, H.233, S.234, V.235, A.263, V.264, G.265, R.266, E.309, P.310, M.311 Ligands: FAD.3 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:M.311 Hydrogen bonds: B:Y.181, B:Y.181, B:I.182, B:A.202, B:V.235, B:V.235, B:R.266, B:M.311 Water bridges: B:G.265, B:G.265

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mattevi, A. et al., The refined crystal structure of Pseudomonas putida lipoamide dehydrogenase complexed with NAD+ at 2.45 A resolution. Proteins (1992)

Release Date

1994-01-31

Peptides

DIHYDROLIPOAMIDE DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

DIHYDROLIPOAMIDE DEHYDROGENASE