- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 20 x SO4: SULFATE ION(Non-functional Binders)
- 8 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.6: 26 residues within 4Å:- Chain A: F.8, G.9, K.10, F.11, H.15, H.18, M.21, C.37, R.42, E.83, I.86, P.87, S.88, Y.89, N.91, G.92, W.93, W.96, S.116, S.117, E.118, D.137, R.140, F.143, V.145
- Ligands: SO4.1
26 PLIP interactions:26 interactions with chain A- Hydrophobic interactions: A:W.96
- Hydrogen bonds: A:F.8, A:K.10, A:F.11, A:H.18, A:R.42, A:R.42, A:P.87, A:S.117, A:S.117, A:S.117, A:E.118, A:R.140, A:R.140, A:F.143, A:V.145
- Salt bridges: A:K.10, A:K.10, A:H.18
- pi-Stacking: A:Y.89, A:W.93, A:W.93, A:W.96, A:W.96
- pi-Cation interactions: A:R.140, A:R.140
NAD.7: 10 residues within 4Å:- Chain A: S.198, A.199, W.200, Y.233, Y.236, A.237
- Chain B: K.70
- Chain D: Y.71
- Ligands: SO4.4, SO4.5
12 PLIP interactions:9 interactions with chain A, 1 interactions with chain D, 2 interactions with chain B- Hydrophobic interactions: A:W.200
- Hydrogen bonds: A:S.198, A:S.198, A:W.200, A:A.237
- pi-Stacking: A:W.200, A:Y.233, A:Y.236, A:Y.236
- Salt bridges: D:K.70, B:K.70, B:K.70
NAD.13: 26 residues within 4Å:- Chain B: F.8, G.9, K.10, F.11, H.15, H.18, M.21, C.37, R.42, E.83, I.86, P.87, S.88, Y.89, N.91, G.92, W.93, W.96, S.116, S.117, E.118, D.137, R.140, F.143, V.145
- Ligands: SO4.8
26 PLIP interactions:26 interactions with chain B- Hydrophobic interactions: B:W.96
- Hydrogen bonds: B:F.8, B:K.10, B:F.11, B:H.18, B:R.42, B:R.42, B:P.87, B:S.117, B:S.117, B:S.117, B:E.118, B:R.140, B:R.140, B:F.143, B:V.145
- Salt bridges: B:K.10, B:K.10, B:H.18
- pi-Stacking: B:Y.89, B:W.93, B:W.93, B:W.96, B:W.96
- pi-Cation interactions: B:R.140, B:R.140
NAD.14: 10 residues within 4Å:- Chain A: K.70
- Chain B: S.198, A.199, W.200, Y.233, Y.236, A.237
- Chain C: Y.71
- Ligands: SO4.11, SO4.12
12 PLIP interactions:9 interactions with chain B, 1 interactions with chain C, 2 interactions with chain A- Hydrophobic interactions: B:W.200
- Hydrogen bonds: B:S.198, B:S.198, B:W.200, B:A.237
- pi-Stacking: B:W.200, B:Y.233, B:Y.236, B:Y.236
- Salt bridges: C:K.70, A:K.70, A:K.70
NAD.20: 26 residues within 4Å:- Chain C: F.8, G.9, K.10, F.11, H.15, H.18, M.21, C.37, R.42, E.83, I.86, P.87, S.88, Y.89, N.91, G.92, W.93, W.96, S.116, S.117, E.118, D.137, R.140, F.143, V.145
- Ligands: SO4.15
25 PLIP interactions:25 interactions with chain C- Hydrophobic interactions: C:W.96
- Hydrogen bonds: C:F.8, C:K.10, C:F.11, C:R.42, C:R.42, C:P.87, C:S.117, C:S.117, C:S.117, C:D.137, C:R.140, C:R.140, C:F.143, C:V.145
- Salt bridges: C:K.10, C:K.10, C:H.18
- pi-Stacking: C:Y.89, C:W.93, C:W.93, C:W.96, C:W.96
- pi-Cation interactions: C:R.140, C:R.140
NAD.21: 10 residues within 4Å:- Chain B: Y.71
- Chain C: S.198, A.199, W.200, Y.233, Y.236, A.237
- Chain D: K.70
- Ligands: SO4.18, SO4.19
13 PLIP interactions:10 interactions with chain C, 2 interactions with chain D, 1 interactions with chain B- Hydrophobic interactions: C:W.200
- Hydrogen bonds: C:S.198, C:S.198, C:W.200, C:Y.233, C:A.237
- pi-Stacking: C:W.200, C:Y.233, C:Y.236, C:Y.236
- Salt bridges: D:K.70, D:K.70, B:K.70
NAD.27: 26 residues within 4Å:- Chain D: F.8, G.9, K.10, F.11, H.15, H.18, M.21, C.37, R.42, E.83, I.86, P.87, S.88, Y.89, N.91, G.92, W.93, W.96, S.116, S.117, E.118, D.137, R.140, F.143, V.145
- Ligands: SO4.22
25 PLIP interactions:25 interactions with chain D- Hydrophobic interactions: D:W.96
- Hydrogen bonds: D:F.8, D:K.10, D:F.11, D:R.42, D:R.42, D:P.87, D:S.117, D:S.117, D:S.117, D:D.137, D:R.140, D:R.140, D:F.143, D:V.145
- Salt bridges: D:K.10, D:K.10, D:H.18
- pi-Stacking: D:Y.89, D:W.93, D:W.93, D:W.96, D:W.96
- pi-Cation interactions: D:R.140, D:R.140
NAD.28: 10 residues within 4Å:- Chain A: Y.71
- Chain C: K.70
- Chain D: S.198, A.199, W.200, Y.233, Y.236, A.237
- Ligands: SO4.25, SO4.26
13 PLIP interactions:2 interactions with chain C, 10 interactions with chain D, 1 interactions with chain A- Salt bridges: C:K.70, C:K.70, A:K.70
- Hydrophobic interactions: D:W.200
- Hydrogen bonds: D:S.198, D:S.198, D:W.200, D:Y.233, D:A.237
- pi-Stacking: D:W.200, D:Y.233, D:Y.236, D:Y.236
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Singh, S.K. et al., Crystal structure of Haemophilus influenzae NadR protein. A bifunctional enzyme endowed with NMN adenyltransferase and ribosylnicotinimide kinase activities. J.Biol.Chem. (2002)
- Release Date
- 2002-08-07
- Peptides
- TRANSCRIPTIONAL REGULATOR NADR: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-tetramer
- Ligands
- 20 x SO4: SULFATE ION(Non-functional Binders)
- 8 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Singh, S.K. et al., Crystal structure of Haemophilus influenzae NadR protein. A bifunctional enzyme endowed with NMN adenyltransferase and ribosylnicotinimide kinase activities. J.Biol.Chem. (2002)
- Release Date
- 2002-08-07
- Peptides
- TRANSCRIPTIONAL REGULATOR NADR: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A