SMTL ID : 1lwl.1

Crystal Structure of Cytochrome P450-cam with a Fluorescent Probe D-8-Ad (Adamantane-1-carboxylic acid-5-dimethylamino-naphthalene-1-sulfonylamino-octyl-amide)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 23 residues within 4Å: Chain A: P.101, T.102, Q.109, R.113, V.120, L.245, L.246, G.249, G.250, T.253, V.254, V.296, D.298, R.300, Q.323, T.350, F.351, G.352, H.356, C.358, G.360, A.364 Ligands: DSO.2 21 PLIP interactions: 21 interactions with chain A, Hydrophobic interactions: A:T.102, A:V.120, A:L.246, A:T.253, A:V.254, A:V.296, A:V.296, A:Q.323, A:T.350, A:F.351, A:F.351, A:A.364 Hydrogen bonds: A:Q.109, A:Q.323 Water bridges: A:H.353, A:H.356 Salt bridges: A:R.113, A:R.300, A:H.356, A:H.356 Metal complexes: A:C.358

1 x DSO: ADAMANTANE-1-CARBOXYLIC ACID-5-DIMETHYLAMINO-NAPHTHALENE-1-SULFONYLAMINO-OCTYL-AMIDE(Non-covalent)

DSO.2: 16 residues within 4Å: Chain A: Y.30, N.60, F.88, P.90, E.92, A.93, Y.97, F.99, P.188, F.194, V.248, G.249, T.253, I.396, V.397 Ligands: HEM.1 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.88, A:F.88, A:P.90, A:A.93, A:F.194, A:T.253, A:I.396, A:I.396, A:V.397 pi-Stacking: A:Y.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dunn, A.R. et al., Fluorescent probes for cytochrome P450 structural characterization and inhibitor screening. J.AM.CHEM.SOC. (2002)

Release Date

2002-12-18

Peptides

Cytochrome P450-cam: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450-cam

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