SMTL ID : 1lyw.8 (11 other biounits)

CATHEPSIN D AT PH 7.5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-2-2-mer

Ligands

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 14 residues within 4Å: Chain A: N.38, L.39, W.40, F.74, I.76, Y.78, L.83, L.87 Chain B: V.9, F.10, G.11, S.38, V.39, V.42 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.38, A:N.38, A:L.39, A:W.40, A:Y.78 pi-Cation interactions: A:F.74 EPE.2: 14 residues within 4Å: Chain C: Y.10, S.36, N.38, L.39, W.40, F.74, Y.78, L.83, L.87 Chain D: F.10, G.11, I.29, V.39, V.42 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:Y.10, C:S.36, C:N.38, C:L.39, C:W.40, C:Y.78 pi-Cation interactions: C:F.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, A.Y. et al., Conformational switching in an aspartic proteinase. Nat.Struct.Biol. (1998)

Release Date

1999-07-22

Peptides

CATHEPSIN D: AC
CATHEPSIN D: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

CATHEPSIN D

CATHEPSIN D

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