- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 2 x GLY- PRO- ARG- PRO: GLY-PRO-ARG-PRO peptide(Non-covalent)
- 2 x GLY- HIS- ARG- PRO: GLY-HIS-ARG-PRO peptide(Non-covalent)
GLY-HIS-ARG-PRO.3: 14 residues within 4Å:- Chain B: L.364, N.368, M.371, T.372, W.389, E.401, D.402, R.410, C.411, H.412, T.435, D.436, M.442
- Ligands: NDG.5
12 PLIP interactions:12 interactions with chain B- Hydrophobic interactions: B:L.364, B:T.372, B:W.389, B:W.389, B:R.410
- Hydrogen bonds: B:R.410, B:R.410, B:H.412, B:D.436
- Salt bridges: B:E.401, B:D.402, B:R.410
GLY-HIS-ARG-PRO.4: 15 residues within 4Å:- Chain E: L.364, N.368, M.371, T.372, W.389, E.401, D.402, R.410, C.411, H.412, T.435, D.436, M.442, S.447
- Ligands: NDG.10
13 PLIP interactions:13 interactions with chain E- Hydrophobic interactions: E:L.364, E:T.372, E:W.389, E:W.389
- Hydrogen bonds: E:R.410, E:R.410, E:H.412, E:T.435, E:S.447, E:S.447
- Salt bridges: E:E.401, E:D.402, E:R.410
- 5 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)(Non-functional Binders)
NDG.5: 5 residues within 4Å:- Chain B: Y.365, N.368
- Ligands: GLY-HIS-ARG-PRO.3, GLY-HIS-ARG-PRO.3, NAG.15
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.368
NDG.7: 2 residues within 4Å:- Chain C: N.52, S.56
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:N.52, C:S.56, C:S.56
NDG.10: 5 residues within 4Å:- Chain E: Y.365, N.368
- Ligands: GLY-HIS-ARG-PRO.4, GLY-HIS-ARG-PRO.4, NDG.16
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:N.368
NDG.12: 4 residues within 4Å:- Chain F: N.52, G.55, S.56
- Ligands: NAG.13
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:N.52, F:N.52, F:S.56
NDG.16: 1 residues within 4Å:- Ligands: NDG.10
No protein-ligand interaction detected (PLIP)- 4 x CA: CALCIUM ION(Non-covalent)
CA.6: 3 residues within 4Å:- Chain B: D.385, D.387, W.389
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.385, B:D.385, B:D.387, B:W.389
CA.9: 4 residues within 4Å:- Chain C: D.318, D.320, F.322, G.324
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:D.318, C:D.318, C:D.320, C:F.322, C:G.324
CA.11: 3 residues within 4Å:- Chain E: D.385, D.387, W.389
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:D.385, E:D.385, E:D.387, E:W.389
CA.14: 4 residues within 4Å:- Chain F: D.318, D.320, F.322, G.324
5 PLIP interactions:5 interactions with chain F- Metal complexes: F:D.318, F:D.318, F:D.320, F:F.322, F:G.324
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, Z. et al., Crystal Structure of Native Chicken Fibrinogen at 2.7 A Resolution. Biochemistry (2001)
- Release Date
- 2002-06-26
- Peptides
- Fibrinogen alpha subunit: AD
Fibrinogen beta chain: BE
Fibrinogen gamma chain: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.70 Å
- Oligo State
- hetero-2-2-2-mer
- Ligands
- 2 x GLY- PRO- ARG- PRO: GLY-PRO-ARG-PRO peptide(Non-covalent)
- 2 x GLY- HIS- ARG- PRO: GLY-HIS-ARG-PRO peptide(Non-covalent)
- 5 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)(Non-functional Binders)
- 4 x CA: CALCIUM ION(Non-covalent)
- 3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Yang, Z. et al., Crystal Structure of Native Chicken Fibrinogen at 2.7 A Resolution. Biochemistry (2001)
- Release Date
- 2002-06-26
- Peptides
- Fibrinogen alpha subunit: AD
Fibrinogen beta chain: BE
Fibrinogen gamma chain: CF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
DB
BE
EC
CF
F