- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-pentamer
- Ligands
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 20 x HEC: HEME C(Non-covalent)(Covalent)
HEC.2: 13 residues within 4Å:- Chain A: S.6, H.9, C.15, S.17, C.18, H.19, P.24, A.59, H.62, A.63, V.64, H.65
- Ligands: HEC.4
9 PLIP interactions:9 interactions with chain A,- Hydrophobic interactions: A:P.24, A:P.24, A:A.59, A:V.64
- Hydrogen bonds: A:V.64, A:H.65
- Water bridges: A:D.66
- Metal complexes: A:H.19, A:H.65
HEC.3: 16 residues within 4Å:- Chain A: V.48, P.51, H.52, N.55, L.56, D.60, C.61, T.74, C.75, S.77, C.78, H.79, R.83, T.84, V.88
- Ligands: HEC.5
16 PLIP interactions:16 interactions with chain A,- Hydrophobic interactions: A:V.48, A:P.51, A:P.51, A:L.56, A:V.88
- Water bridges: A:H.79, A:R.83
- Salt bridges: A:H.79, A:R.83
- pi-Stacking: A:H.52, A:H.52, A:H.79, A:H.79
- pi-Cation interactions: A:R.83
- Metal complexes: A:H.52, A:H.79
HEC.4: 21 residues within 4Å:- Chain A: L.5, F.8, H.9, S.17, C.18, Q.34, C.35, C.38, H.39, C.58, H.62, V.64, V.69, G.70
- Chain E: T.23, P.24, S.25, A.26
- Ligands: HEC.2, HEC.5, HEC.20
11 PLIP interactions:8 interactions with chain A, 3 interactions with chain E,- Hydrophobic interactions: A:L.5, A:F.8, A:Q.34, A:H.62, A:V.64, E:T.23, E:A.26
- Hydrogen bonds: A:G.70
- Metal complexes: A:H.9, A:H.39
- Water bridges: E:A.26
HEC.5: 18 residues within 4Å:- Chain A: H.39, L.42, M.45, D.46, V.48, H.49, H.52, L.56, V.57, C.58, C.61, H.62, K.72, P.73, S.85, L.89
- Ligands: HEC.3, HEC.4
8 PLIP interactions:8 interactions with chain A,- Hydrophobic interactions: A:H.39, A:L.42, A:V.48, A:K.72, A:P.73
- Salt bridges: A:H.49
- Metal complexes: A:H.49, A:H.62
HEC.7: 11 residues within 4Å:- Chain B: S.6, H.9, G.14, C.15, C.18, H.19, P.24, A.59, V.64, H.65
- Ligands: HEC.9
6 PLIP interactions:6 interactions with chain B,- Hydrophobic interactions: B:P.24, B:A.59
- Hydrogen bonds: B:V.64
- Water bridges: B:H.62
- Metal complexes: B:H.19, B:H.65
HEC.8: 15 residues within 4Å:- Chain B: V.48, P.51, H.52, N.55, L.56, P.73, T.74, C.75, S.77, C.78, H.79, R.83, T.84, V.88
- Ligands: HEC.10
14 PLIP interactions:14 interactions with chain B,- Hydrophobic interactions: B:V.48, B:P.51, B:P.51, B:L.56, B:V.88
- Water bridges: B:H.79
- Salt bridges: B:H.79, B:R.83
- pi-Stacking: B:H.79, B:H.79, B:H.79
- pi-Cation interactions: B:R.83
- Metal complexes: B:H.52, B:H.79
HEC.9: 19 residues within 4Å:- Chain B: L.5, F.8, H.9, S.17, C.18, Q.34, C.35, C.38, H.39, C.58, H.62, V.64, V.69, G.70
- Chain C: C.38, H.39
- Ligands: HEC.7, HEC.10, HEC.13
10 PLIP interactions:9 interactions with chain B, 1 interactions with chain C,- Hydrophobic interactions: B:L.5, B:L.5, B:F.8, B:Q.34, B:H.62, B:V.64
- Hydrogen bonds: B:G.70
- Metal complexes: B:H.9, B:H.39
- Salt bridges: C:H.39
HEC.10: 16 residues within 4Å:- Chain B: H.39, L.42, M.45, H.49, H.52, L.56, V.57, C.58, C.61, H.62, K.72, P.73, S.85, L.89
- Ligands: HEC.8, HEC.9
9 PLIP interactions:9 interactions with chain B,- Hydrophobic interactions: B:H.39, B:L.42, B:L.56, B:K.72, B:P.73
- Hydrogen bonds: B:S.85
- Salt bridges: B:K.72
- Metal complexes: B:H.49, B:H.62
HEC.11: 15 residues within 4Å:- Chain C: S.6, H.9, A.10, G.14, C.15, S.17, C.18, H.19, P.24, A.59, H.62, A.63, V.64, H.65
- Ligands: HEC.13
7 PLIP interactions:7 interactions with chain C,- Hydrophobic interactions: C:A.10, C:P.24, C:A.59
- Hydrogen bonds: C:V.64, C:H.65
- Metal complexes: C:H.19, C:H.65
HEC.12: 19 residues within 4Å:- Chain C: A.47, P.51, H.52, N.55, L.56, P.73, T.74, C.75, S.77, C.78, H.79, R.83, T.84, V.88
- Chain D: K.72, T.84, S.85, A.86
- Ligands: HEC.14
22 PLIP interactions:16 interactions with chain C, 6 interactions with chain D,- Hydrophobic interactions: C:P.51, C:P.51, C:L.56, C:L.56, C:V.88, D:K.72
- Water bridges: C:H.79, C:R.83, C:R.83, C:R.83, D:R.83, D:S.85, D:S.85
- Salt bridges: C:R.83
- pi-Stacking: C:H.52, C:H.79, C:H.79
- pi-Cation interactions: C:R.83
- Metal complexes: C:H.52, C:H.79
- Hydrogen bonds: D:S.85, D:A.86
HEC.13: 19 residues within 4Å:- Chain B: C.38, H.39
- Chain C: L.5, F.8, H.9, S.17, C.18, Q.34, C.35, C.38, H.39, C.58, H.62, V.64, V.69, G.70
- Ligands: HEC.9, HEC.11, HEC.14
9 PLIP interactions:8 interactions with chain C, 1 interactions with chain B,- Hydrophobic interactions: C:L.5, C:L.5, C:F.8, C:H.62, C:V.64
- Hydrogen bonds: C:G.70
- Metal complexes: C:H.9, C:H.39
- Salt bridges: B:H.39
HEC.14: 17 residues within 4Å:- Chain C: H.39, L.42, M.45, V.48, H.49, H.52, L.56, V.57, C.58, C.61, H.62, K.72, P.73, S.85, L.89
- Ligands: HEC.12, HEC.13
11 PLIP interactions:11 interactions with chain C,- Hydrophobic interactions: C:H.39, C:L.42, C:V.48, C:L.56, C:K.72, C:P.73
- Hydrogen bonds: C:S.85, C:S.85
- Salt bridges: C:K.72
- Metal complexes: C:H.49, C:H.62
HEC.15: 13 residues within 4Å:- Chain D: S.6, H.9, A.10, G.14, C.15, C.18, H.19, P.24, A.59, A.63, V.64, H.65
- Ligands: HEC.17
6 PLIP interactions:6 interactions with chain D,- Hydrophobic interactions: D:P.24, D:A.59, D:V.64
- Hydrogen bonds: D:V.64
- Metal complexes: D:H.19, D:H.65
HEC.16: 14 residues within 4Å:- Chain D: V.48, P.51, H.52, N.55, L.56, D.60, C.61, C.75, C.78, H.79, R.83, T.84, V.88
- Ligands: HEC.18
15 PLIP interactions:15 interactions with chain D,- Hydrophobic interactions: D:V.48, D:P.51, D:P.51, D:L.56, D:V.88
- Water bridges: D:H.79, D:R.83, D:R.83, D:R.83
- Salt bridges: D:R.83
- pi-Stacking: D:H.79
- pi-Cation interactions: D:H.79, D:R.83
- Metal complexes: D:H.52, D:H.79
HEC.17: 21 residues within 4Å:- Chain D: L.5, F.8, H.9, S.17, C.18, Q.34, C.35, C.38, H.39, C.58, H.62, V.64, V.69, G.70
- Chain E: S.37, C.38, H.39
- Ligands: HEC.15, HEC.18, HEC.22, HEC.23
12 PLIP interactions:11 interactions with chain D, 1 interactions with chain E,- Hydrophobic interactions: D:L.5, D:L.5, D:F.8, D:Q.34, D:H.62, D:V.64
- Hydrogen bonds: D:G.70
- Water bridges: D:F.8, D:Q.71
- Metal complexes: D:H.9, D:H.39
- Salt bridges: E:H.39
HEC.18: 18 residues within 4Å:- Chain D: H.39, G.40, L.42, M.45, V.48, H.49, H.52, L.56, V.57, C.58, C.61, H.62, K.72, P.73, S.85, L.89
- Ligands: HEC.16, HEC.17
11 PLIP interactions:11 interactions with chain D,- Hydrophobic interactions: D:H.39, D:L.42, D:V.48, D:L.56, D:K.72, D:P.73, D:L.89
- Hydrogen bonds: D:S.85
- Salt bridges: D:K.72
- Metal complexes: D:H.49, D:H.62
HEC.20: 14 residues within 4Å:- Chain A: S.12
- Chain E: S.6, H.9, C.15, S.17, C.18, H.19, P.24, E.31, A.59, V.64, H.65
- Ligands: HEC.4, HEC.22
7 PLIP interactions:7 interactions with chain E,- Hydrophobic interactions: E:P.24, E:E.31, E:V.64
- Water bridges: E:H.62, E:V.64
- Metal complexes: E:H.19, E:H.65
HEC.21: 16 residues within 4Å:- Chain E: P.51, H.52, N.55, L.56, C.61, P.73, T.74, C.75, S.77, C.78, H.79, R.83, T.84, S.85, V.88
- Ligands: HEC.23
15 PLIP interactions:15 interactions with chain E,- Hydrophobic interactions: E:P.51, E:P.51, E:N.55, E:L.56, E:L.56, E:V.88
- Water bridges: E:R.83, E:R.83
- Salt bridges: E:H.79, E:R.83
- pi-Stacking: E:H.79, E:H.79
- pi-Cation interactions: E:R.83
- Metal complexes: E:H.52, E:H.79
HEC.22: 19 residues within 4Å:- Chain D: C.38, H.39
- Chain E: L.5, F.8, H.9, S.17, C.18, Q.34, C.35, C.38, H.39, C.58, H.62, V.64, V.69, G.70
- Ligands: HEC.17, HEC.20, HEC.23
11 PLIP interactions:11 interactions with chain E,- Hydrophobic interactions: E:L.5, E:L.5, E:F.8, E:Q.34, E:H.62, E:V.64
- Hydrogen bonds: E:G.70
- Water bridges: E:F.8, E:S.12
- Metal complexes: E:H.9, E:H.39
HEC.23: 19 residues within 4Å:- Chain E: H.39, L.42, M.45, D.46, V.48, H.49, H.52, L.56, V.57, C.58, C.61, H.62, K.72, P.73, S.85, L.89
- Ligands: HEC.17, HEC.21, HEC.22
15 PLIP interactions:15 interactions with chain E,- Hydrophobic interactions: E:H.39, E:L.42, E:L.42, E:V.48, E:L.56, E:K.72, E:P.73, E:L.89
- Water bridges: E:D.46, E:D.46, E:H.49, E:H.49
- Salt bridges: E:H.49
- Metal complexes: E:H.49, E:H.62
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Leys, D. et al., Crystal structures at atomic resolution reveal the novel concept of 'electron-harvesting' as a role for the small tetraheme cytochrome c. J.Biol.Chem. (2002)
- Release Date
- 2002-08-14
- Peptides
- Small tetraheme cytochrome c: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
DD
EE
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.55 Å
- Oligo State
- homo-pentamer
- Ligands
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 20 x HEC: HEME C(Non-covalent)(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Leys, D. et al., Crystal structures at atomic resolution reveal the novel concept of 'electron-harvesting' as a role for the small tetraheme cytochrome c. J.Biol.Chem. (2002)
- Release Date
- 2002-08-14
- Peptides
- Small tetraheme cytochrome c: ABCDE
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
CC
DD
EE
F