SMTL ID : 1m2z.1

Crystal structure of a dimer complex of the human glucocorticoid receptor ligand-binding domain bound to dexamethasone and a TIF2 coactivator motif

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-2-2-mer

Ligands

3 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.1: 6 residues within 4Å: Chain A: F.166, D.167, R.170, M.171, L.252 Ligands: BOG.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.167, A:R.170 Water bridges: A:L.253 BOG.2: 3 residues within 4Å: Chain A: D.167, M.171 Ligands: BOG.1 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.168, A:E.168 BOG.3: 7 residues within 4Å: Chain A: K.175, G.178, K.179, I.181, V.182, N.191, W.192 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:K.175, A:K.179 Hydrogen bonds: A:N.191, A:W.192

2 x DEX: DEXAMETHASONE(Non-covalent)

DEX.4: 20 residues within 4Å: Chain A: M.40, L.43, N.44, G.47, Q.50, W.80, M.81, M.84, A.85, R.91, F.103, Q.122, M.126, L.212, Y.215, C.216, T.219, I.227, F.229, L.233 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.80, A:M.84, A:F.103, A:Q.122, A:Y.215 Hydrogen bonds: A:L.43, A:N.44, A:Q.50, A:R.91, A:T.219 DEX.5: 19 residues within 4Å: Chain C: M.40, L.43, N.44, G.47, Q.50, W.80, M.81, M.84, A.85, R.91, F.103, Q.122, M.126, Y.215, C.216, T.219, I.227, F.229, L.233 9 PLIP interactions: 9 interactions with chain C Hydrophobic interactions: C:W.80, C:M.84, C:F.103, C:Q.122, C:Y.215 Hydrogen bonds: C:L.43, C:N.44, C:Q.50, C:R.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bledsoe, R.B. et al., Crystal Structure of the Glucocorticoid Receptor Ligand Binding Domain Reveals a Novel Mode of Receptor Dimerization and Coactivator Recognition. Cell(Cambridge,Mass.) (2002)

Release Date

2003-07-15

Peptides

glucocorticoid receptor: AC
nuclear receptor coactivator 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
D

B
B

D
E

glucocorticoid receptor

nuclear receptor coactivator 2

Related Entries With Identical Sequence