SMTL ID : 1m3h.1

Crystal Structure of Hogg1 D268E Mutant with Product Oligonucleotide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x DG- DC- DG- DT- DC- DC- DA- DDX: 5'-D(P*GP*CP*GP*TP*CP*CP*AP*(DDX))-3'(Non-covalent)

DG-DC-DG-DT-DC-DC-DA-DDX.1: 19 residues within 4Å: Chain A: C.8, T.9, G.10, G.11, A.12, C.13, G.14, C.15 Chain B: F.136, N.141, N.142, N.143, I.144, I.147, K.241, V.261, H.262, F.311 Ligands: CA.3 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:I.147 Hydrogen bonds: B:I.144 Salt bridges: B:K.241, B:H.262

1 x DG- DT- DC- DT- DA- DC- DC: 5'-D(P*GP*TP*CP*TP*AP*CP*C)-3'(Non-covalent)

DG-DT-DC-DT-DA-DC-DC.2: 21 residues within 4Å: Chain A: G.1, G.2, T.3, A.4, G.5, A.6, C.7 Chain B: S.140, N.141, Y.195, Y.199, L.235, P.236, G.237, V.238, G.239, T.240, K.241, V.242, E.260, V.261 Protein-ligand interaction information (PLIP) not available

1 x CA: CALCIUM ION(Non-functional Binders)

CA.3: 1 residues within 4Å: Ligands: DG-DC-DG-DT-DC-DC-DA-DDX.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chung, S.J. et al., Structures of End Products Resulting from Lesion Processing by a DNA Glycosylase/Lyase. Chem.Biol. (2004)

Release Date

2004-04-20

Peptides

8-Oxoguanine DNA Glycosylase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

8-Oxoguanine DNA Glycosylase

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