SMTL ID : 1m4g.1

Aminoglycoside 2'-N-acetyltransferase from Mycobacterium tuberculosis-Complex with Coenzyme A and Ribostamycin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x COA: COENZYME A(Non-covalent)

COA.1: 18 residues within 4Å: Chain A: A.31, F.32, V.84, A.85, V.86, R.91, G.92, Q.93, R.94, L.95, V.96, S.118, S.119, R.121, R.124, L.125, Y.126 Ligands: RIO.3 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:F.32, A:V.84, A:V.96 Hydrogen bonds: A:V.84, A:V.86, A:R.91, A:R.91, A:G.92, A:G.92, A:R.94, A:L.95, A:V.96, A:S.119, A:R.121, A:R.124 Water bridges: A:W.90, A:R.91, A:Q.93, A:S.97 Salt bridges: A:R.124 COA.2: 15 residues within 4Å: Chain B: A.31, F.32, V.84, A.85, V.86, R.91, G.92, Q.93, R.94, L.95, V.96, S.119, R.121, Y.126 Ligands: RIO.4 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:F.32, B:V.84, B:V.96 Hydrogen bonds: B:V.84, B:V.86, B:R.91, B:R.91, B:G.92, B:R.94, B:L.95, B:V.96, B:S.119 Water bridges: B:W.90, B:R.91, B:R.91, B:G.92, B:Q.93, B:S.97

2 x RIO: RIBOSTAMYCIN(Non-covalent)

RIO.3: 13 residues within 4Å: Chain A: F.32, D.35, F.36, D.40, E.82, G.83, S.117, S.119, R.123, D.152, D.179, W.181 Ligands: COA.1 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:D.35, A:D.35, A:D.40, A:E.82, A:G.83, A:S.117, A:R.123, A:W.181 Water bridges: A:D.40, A:V.84, A:S.117, A:A.120, A:A.120, A:D.151, A:D.152, A:R.176, A:D.179, A:D.179 RIO.4: 14 residues within 4Å: Chain B: F.32, D.35, F.36, D.40, E.82, G.83, S.117, S.119, D.152, T.155, D.179, W.181 Ligands: COA.2, PAP.5 18 PLIP interactions: 18 interactions with chain B Hydrogen bonds: B:D.35, B:D.40, B:E.82, B:E.82, B:G.83, B:S.117, B:R.121, B:D.152, B:W.181 Water bridges: B:V.84, B:S.117, B:R.123, B:R.123, B:D.151, B:D.152, B:D.152, B:R.176, B:D.179

2 x PAP: 3'-PHOSPHATE-ADENOSINE-5'-DIPHOSPHATE(Non-covalent)(Non-functional Binders)

PAP.5: 6 residues within 4Å: Chain B: S.119, A.120, R.121, R.123 Ligands: RIO.4, PAP.6 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:A.120, B:R.121 Water bridges: B:R.123, B:R.123, B:R.123 Salt bridges: B:R.121, B:R.123 PAP.6: 1 residues within 4Å: Ligands: PAP.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vetting, M.W. et al., Aminoglycoside 2'-N-acetyltransferase from Mycobacterium tuberculosis in complex with coenzyme A and aminoglycoside substrates. Nat.Struct.Biol. (2002)

Release Date

2002-08-28

Peptides

Aminoglycoside 2'-N-acetyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aminoglycoside 2'-N-acetyltransferase

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