SMTL ID : 1m4w.1

Thermophilic b-1,4-xylanase from Nonomuraea flexuosa

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x NAG: N-ACETYL-D-GLUCOSAMINE(Post Translational Modification)(Non-covalent)

NAG.1: 8 residues within 4Å: Chain A: T.5, Q.6, N.7, W.20, T.21, D.22, P.24 Ligands: NAG.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:T.21, A:P.24 Hydrogen bonds: A:Q.6, A:W.20, A:T.21 Water bridges: A:N.7, A:N.7 NAG.2: 5 residues within 4Å: Chain A: D.22, P.24 Ligands: NAG.1, BMA.3, MAN.4 No protein-ligand interaction detected (PLIP)

1 x BMA: BETA-D-MANNOSE(Non-functional Binders)

BMA.3: 2 residues within 4Å: Ligands: NAG.2, MAN.4 No protein-ligand interaction detected (PLIP)

1 x MAN: ALPHA-D-MANNOSE(Non-functional Binders)

MAN.4: 2 residues within 4Å: Ligands: NAG.2, BMA.3 No protein-ligand interaction detected (PLIP)

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.5: 5 residues within 4Å: Chain A: S.33, G.34, G.35, S.36, S.187 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.35, A:S.36, A:S.187

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 4 residues within 4Å: Chain A: W.20, Y.78, P.125, Y.170 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.78, A:Y.170 Water bridges: A:S.18, A:P.125

Links

RCSB   PDBe   PDBj   PDBsum   CATH   PLIP

Citation

Hakulinen, N. et al., Three-dimensional structures of thermophilic beta-1,4-xylanases from Chaetomium thermophilum and Nonomuraea flexuosa. Comparison of twelve xylanases in relation to their thermal stability. Eur.J.Biochem. (2003)

Release Date

2003-07-08

Peptides

endoxylanase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

endoxylanase