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SMTL ID : 1m5b.3
(2 other biounits)
X-RAY STRUCTURE OF THE GLUR2 LIGAND BINDING CORE (S1S2J) IN COMPLEX WITH 2-Me-Tet-AMPA AT 1.85 A RESOLUTION.
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.85 Å
Oligo State
homo-trimer
Ligands
5 x
ZN
:
ZINC ION
(Non-covalent)
ZN.1:
4 residues within 4Å:
Chain A:
E.42
,
K.45
,
H.46
,
L.241
2
PLIP interactions
:
2 interactions with chain A
Metal complexes:
A:E.42
,
A:H.46
ZN.3:
3 residues within 4Å:
Chain A:
D.65
,
D.67
Chain B:
H.23
5
PLIP interactions
:
1 interactions with chain B
,
2 interactions with chain A
,
2 Ligand-Water interactions
Metal complexes:
B:H.23
,
A:D.65
,
A:D.65
,
H
2
O.8
,
H
2
O.22
ZN.4:
3 residues within 4Å:
Chain B:
E.42
,
H.46
Chain C:
E.166
4
PLIP interactions
:
2 interactions with chain B
,
2 interactions with chain C
Metal complexes:
B:E.42
,
B:H.46
,
C:E.166
,
C:E.166
ZN.6:
5 residues within 4Å:
Chain A:
H.23
,
E.24
Chain C:
K.20
,
H.23
,
E.30
5
PLIP interactions
:
3 interactions with chain C
,
1 interactions with chain A
,
1 Ligand-Water interactions
Metal complexes:
C:H.23
,
C:E.30
,
C:E.30
,
A:H.23
,
H
2
O.11
ZN.7:
4 residues within 4Å:
Chain C:
E.42
,
H.46
,
L.241
,
Q.244
3
PLIP interactions
:
2 interactions with chain C
,
1 Ligand-Water interactions
Metal complexes:
C:E.42
,
C:H.46
,
H
2
O.28
3 x
BN1
:
(S)-2-AMINO-3-[3-HYDROXY-5-(2-METHYL-2H-TETRAZOL-5-YL)ISOXAZOL-4-YL]PROPIONIC ACID
(Non-covalent)
BN1.2:
15 residues within 4Å:
Chain A:
E.13
,
Y.16
,
Y.61
,
P.89
,
L.90
,
T.91
,
R.96
,
L.138
,
G.141
,
S.142
,
T.143
,
L.192
,
E.193
,
M.196
,
Y.220
15
PLIP interactions
:
15 interactions with chain A
Hydrophobic interactions:
A:Y.61
,
A:L.138
Hydrogen bonds:
A:P.89
,
A:T.91
,
A:T.91
,
A:S.142
,
A:T.143
,
A:T.143
,
A:T.143
,
A:E.193
,
A:E.193
,
A:E.193
,
A:Y.220
Water bridges:
A:G.141
Salt bridges:
A:R.96
BN1.5:
15 residues within 4Å:
Chain B:
E.13
,
Y.16
,
Y.61
,
P.89
,
L.90
,
T.91
,
R.96
,
L.138
,
G.141
,
S.142
,
T.143
,
L.192
,
E.193
,
M.196
,
Y.220
13
PLIP interactions
:
13 interactions with chain B
Hydrophobic interactions:
B:Y.61
,
B:L.138
Hydrogen bonds:
B:P.89
,
B:T.91
,
B:S.142
,
B:T.143
,
B:T.143
,
B:T.143
,
B:E.193
,
B:E.193
,
B:Y.220
Water bridges:
B:K.144
Salt bridges:
B:R.96
BN1.8:
15 residues within 4Å:
Chain C:
E.13
,
Y.16
,
Y.61
,
P.89
,
L.90
,
T.91
,
R.96
,
L.138
,
G.141
,
S.142
,
T.143
,
L.192
,
E.193
,
M.196
,
Y.220
14
PLIP interactions
:
14 interactions with chain C
Hydrophobic interactions:
C:Y.61
,
C:L.138
Hydrogen bonds:
C:P.89
,
C:T.91
,
C:S.142
,
C:T.143
,
C:T.143
,
C:T.143
,
C:E.193
,
C:E.193
Water bridges:
C:L.138
,
C:K.144
,
C:Y.220
Salt bridges:
C:R.96
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Hogner, A. et al., Structural Basis for AMPA Receptor Activation and Ligand Selectivity: Crystal Structures of Five Agonist Complexes with the GluR2 Ligand-binding Core. J.Mol.Biol. (2002)
Release Date
2002-09-18
Peptides
Glutamate receptor 2:
A
B
C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
C
B
A
C
B
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Glutamate receptor 2
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