- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.57 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x ZN: ZINC ION(Non-covalent)
- 9 x NA: SODIUM ION(Non-functional Binders)
NA.2: 7 residues within 4Å:- Chain A: H.7, H.9, H.40, E.73, D.192, H.194
- Ligands: NA.3
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.73
NA.3: 5 residues within 4Å:- Chain A: H.40, E.73, H.101, H.131
- Ligands: NA.2
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.73
NA.4: 2 residues within 4Å:- Chain A: F.90, L.93
5 PLIP interactions:5 interactions with chain A- Water bridges: A:F.90, A:D.91, A:L.93, A:L.93, A:D.94
NA.7: 7 residues within 4Å:- Chain B: H.7, H.9, H.40, E.73, D.192, H.194
- Ligands: NA.8
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.73
NA.8: 5 residues within 4Å:- Chain B: H.40, E.73, H.101, H.131
- Ligands: NA.7
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.73
NA.9: 2 residues within 4Å:- Chain B: F.90, L.93
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:F.90
NA.12: 7 residues within 4Å:- Chain C: H.7, H.9, H.40, E.73, D.192, H.194
- Ligands: NA.13
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:E.73
NA.13: 5 residues within 4Å:- Chain C: H.40, E.73, H.101, H.131
- Ligands: NA.12
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:E.73
NA.14: 2 residues within 4Å:- Chain C: F.90, L.93
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:L.93
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 6 residues within 4Å:- Chain A: Y.2, L.206, L.209, D.210, F.214, I.219
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.206
- Water bridges: A:Y.2
SO4.10: 6 residues within 4Å:- Chain B: Y.2, L.206, L.209, D.210, F.214, I.219
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:L.206
- Water bridges: B:Y.2
SO4.15: 6 residues within 4Å:- Chain C: Y.2, L.206, L.209, D.210, F.214, I.219
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:L.206
- Water bridges: C:Y.2
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Teplyakov, A. et al., Crystal structure of the Escherichia coli YcdX protein reveals a trinuclear zinc active site. PROTEINS: STRUCT.,FUNCT.,GENET. (2003)
- Release Date
- 2003-04-22
- Peptides
- Hypothetical protein ycdX: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.57 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x ZN: ZINC ION(Non-covalent)
- 9 x NA: SODIUM ION(Non-functional Binders)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Teplyakov, A. et al., Crystal structure of the Escherichia coli YcdX protein reveals a trinuclear zinc active site. PROTEINS: STRUCT.,FUNCT.,GENET. (2003)
- Release Date
- 2003-04-22
- Peptides
- Hypothetical protein ycdX: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
A