SMTL ID : 1m6h.1

Human glutathione-dependent formaldehyde dehydrogenase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.96, G.97, C.99, C.102, C.110 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.96, A:C.99, A:C.102, A:C.110 ZN.2: 4 residues within 4Å: Chain A: C.44, T.46, H.66, C.173 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.44, A:H.66, A:C.173, H2O.1 ZN.7: 5 residues within 4Å: Chain B: C.96, G.97, C.99, C.102, C.110 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.96, B:C.99, B:C.102, B:C.110 ZN.8: 4 residues within 4Å: Chain B: C.44, T.46, H.66, C.173 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.44, B:H.66, B:C.173, H2O.26

2 x K: POTASSIUM ION(Non-covalent)

K.3: 4 residues within 4Å: Chain A: A.186, K.187, E.189, Y.263 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:A.186, A:K.187, A:E.189, H2O.4, H2O.10 K.9: 4 residues within 4Å: Chain B: A.186, K.187, E.189, Y.263 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:K.187, B:E.189, B:Y.263, H2O.27, H2O.28

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 2 residues within 4Å: Chain A: K.314 Chain B: K.314 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain A Water bridges: B:K.314, B:K.314, B:K.314, A:K.314, A:K.314 Salt bridges: B:K.314, A:K.314 PO4.5: 3 residues within 4Å: Chain A: K.83, D.86, K.158 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.86 Water bridges: A:K.83 Salt bridges: A:K.83, A:K.158 PO4.6: 5 residues within 4Å: Chain A: H.45, G.200, G.201, V.202, R.368 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:H.45, A:G.201, A:V.202 Water bridges: A:H.45, A:H.45, A:H.45, A:G.203, A:R.368 Salt bridges: A:H.45, A:R.368 PO4.10: 3 residues within 4Å: Chain B: K.83, D.86, K.158 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:D.86 Water bridges: B:K.83, B:K.83, B:D.86, B:K.158 Salt bridges: B:K.83, B:K.158 PO4.11: 6 residues within 4Å: Chain B: H.45, G.200, G.201, V.202, I.367, R.368 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:H.45, B:G.201, B:V.202, B:I.367 Water bridges: B:H.45, B:G.203 Salt bridges: B:H.45, B:R.368

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sanghani, P.C. et al., Human glutathione-dependent formaldehyde dehydrogenase. Structures of apo, binary, and inhibitory ternary complexes. Biochemistry (2002)

Release Date

2002-07-26

Peptides

Glutathione-dependent formaldehyde dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glutathione-dependent formaldehyde dehydrogenase

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