- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 12 x MN: MANGANESE (II) ION(Non-covalent)
- 26 x K: POTASSIUM ION(Non-covalent)
K.3: 6 residues within 4Å:- Chain A: E.215, N.236, D.238, A.239, I.242, S.247
Ligand excluded by PLIPK.4: 6 residues within 4Å:- Chain A: A.126, E.127, E.299, M.300, N.301
- Ligands: MN.1
Ligand excluded by PLIPK.6: 3 residues within 4Å:- Chain A: E.841, N.843
- Ligands: ADP.16
Ligand excluded by PLIPK.7: 6 residues within 4Å:- Chain A: E.761, H.781, E.783, Q.784, V.787, S.792
Ligand excluded by PLIPK.8: 3 residues within 4Å:- Chain A: D.84, G.112, T.114
Ligand excluded by PLIPK.19: 2 residues within 4Å:- Chain B: H.16, D.112
Ligand excluded by PLIPK.23: 6 residues within 4Å:- Chain C: E.215, N.236, D.238, A.239, I.242, S.247
Ligand excluded by PLIPK.24: 6 residues within 4Å:- Chain C: A.126, E.127, E.299, M.300, N.301
- Ligands: MN.21
Ligand excluded by PLIPK.26: 3 residues within 4Å:- Chain C: E.841, N.843
- Ligands: ADP.39
Ligand excluded by PLIPK.27: 7 residues within 4Å:- Chain C: E.761, H.781, E.783, Q.784, A.785, V.787, S.792
Ligand excluded by PLIPK.28: 3 residues within 4Å:- Chain C: D.84, G.112, T.114
Ligand excluded by PLIPK.29: 3 residues within 4Å:- Chain C: T.143, A.144, R.145
Ligand excluded by PLIPK.42: 2 residues within 4Å:- Chain D: H.16, D.112
Ligand excluded by PLIPK.46: 6 residues within 4Å:- Chain E: E.215, N.236, D.238, A.239, I.242, S.247
Ligand excluded by PLIPK.47: 6 residues within 4Å:- Chain E: A.126, E.127, E.299, M.300, N.301
- Ligands: MN.44
Ligand excluded by PLIPK.49: 3 residues within 4Å:- Chain E: E.841, N.843
- Ligands: ADP.61
Ligand excluded by PLIPK.50: 6 residues within 4Å:- Chain E: E.761, H.781, E.783, Q.784, V.787, S.792
Ligand excluded by PLIPK.51: 3 residues within 4Å:- Chain E: D.84, G.112, T.114
Ligand excluded by PLIPK.52: 3 residues within 4Å:- Chain E: T.143, A.144, R.145
Ligand excluded by PLIPK.64: 2 residues within 4Å:- Chain F: H.16, D.112
Ligand excluded by PLIPK.68: 6 residues within 4Å:- Chain G: E.215, N.236, D.238, A.239, I.242, S.247
Ligand excluded by PLIPK.69: 6 residues within 4Å:- Chain G: A.126, E.127, E.299, M.300, N.301
- Ligands: MN.66
Ligand excluded by PLIPK.71: 3 residues within 4Å:- Chain G: E.841, N.843
- Ligands: ADP.83
Ligand excluded by PLIPK.72: 6 residues within 4Å:- Chain G: E.761, H.781, E.783, Q.784, V.787, S.792
Ligand excluded by PLIPK.73: 3 residues within 4Å:- Chain G: D.84, G.112, T.114
Ligand excluded by PLIPK.74: 3 residues within 4Å:- Chain G: T.143, A.144, R.145
Ligand excluded by PLIP- 28 x CL: CHLORIDE ION(Non-functional Binders)
CL.9: 5 residues within 4Å:- Chain A: Q.93, T.173, M.174, S.177
- Ligands: NET.18
Ligand excluded by PLIPCL.10: 3 residues within 4Å:- Chain A: N.289, N.292, R.294
Ligand excluded by PLIPCL.11: 5 residues within 4Å:- Chain A: A.370, N.371, F.900, P.901, G.902
Ligand excluded by PLIPCL.12: 3 residues within 4Å:- Chain A: K.475, N.485, F.488
Ligand excluded by PLIPCL.13: 4 residues within 4Å:- Chain A: F.578, R.845, A.847, R.848
Ligand excluded by PLIPCL.20: 4 residues within 4Å:- Chain A: E.549
- Chain B: F.15, I.113, D.114
Ligand excluded by PLIPCL.30: 4 residues within 4Å:- Chain C: Q.93, T.173, M.174
- Ligands: NET.41
Ligand excluded by PLIPCL.31: 2 residues within 4Å:- Chain C: H.70, W.71
Ligand excluded by PLIPCL.32: 4 residues within 4Å:- Chain C: W.213, N.289, N.292, R.294
Ligand excluded by PLIPCL.33: 5 residues within 4Å:- Chain C: A.370, N.371, F.900, P.901, G.902
Ligand excluded by PLIPCL.34: 3 residues within 4Å:- Chain C: K.475, N.485, F.488
Ligand excluded by PLIPCL.35: 4 residues within 4Å:- Chain C: E.549
- Chain D: F.15, I.113, D.114
Ligand excluded by PLIPCL.36: 3 residues within 4Å:- Chain C: F.578, A.847, R.848
Ligand excluded by PLIPCL.43: 4 residues within 4Å:- Chain D: S.169, W.170, T.171, Q.172
Ligand excluded by PLIPCL.53: 5 residues within 4Å:- Chain E: Q.93, T.173, M.174, S.177
- Ligands: NET.63
Ligand excluded by PLIPCL.54: 1 residues within 4Å:- Chain E: W.71
Ligand excluded by PLIPCL.55: 3 residues within 4Å:- Chain E: N.289, N.292, R.294
Ligand excluded by PLIPCL.56: 5 residues within 4Å:- Chain E: A.370, N.371, F.900, P.901, G.902
Ligand excluded by PLIPCL.57: 3 residues within 4Å:- Chain E: K.475, N.485, F.488
Ligand excluded by PLIPCL.58: 4 residues within 4Å:- Chain E: F.578, R.845, A.847, R.848
Ligand excluded by PLIPCL.65: 4 residues within 4Å:- Chain E: E.549
- Chain F: F.15, I.113, D.114
Ligand excluded by PLIPCL.75: 4 residues within 4Å:- Chain G: Q.93, T.173, M.174
- Ligands: NET.85
Ligand excluded by PLIPCL.76: 1 residues within 4Å:- Chain G: W.71
Ligand excluded by PLIPCL.77: 3 residues within 4Å:- Chain G: N.289, N.292, R.294
Ligand excluded by PLIPCL.78: 5 residues within 4Å:- Chain G: A.370, N.371, F.900, P.901, G.902
Ligand excluded by PLIPCL.79: 3 residues within 4Å:- Chain G: K.475, N.485, F.488
Ligand excluded by PLIPCL.80: 3 residues within 4Å:- Chain G: R.845, A.847, R.848
Ligand excluded by PLIPCL.86: 4 residues within 4Å:- Chain G: E.549
- Chain H: F.15, I.113, D.114
Ligand excluded by PLIP- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.14: 11 residues within 4Å:- Chain A: M.174, G.175, H.243, Q.285, E.299, N.301, R.303, R.306
- Ligands: MN.1, MN.2, ADP.15
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:G.175, A:N.301
- Water bridges: A:Q.285, A:R.303, A:R.306
- Salt bridges: A:H.243, A:R.303, A:R.306
PO4.37: 11 residues within 4Å:- Chain C: M.174, G.175, H.243, Q.285, E.299, N.301, R.303, R.306
- Ligands: MN.21, MN.22, ADP.38
7 PLIP interactions:7 interactions with chain C- Hydrogen bonds: C:G.175
- Water bridges: C:T.244, C:R.303, C:S.305
- Salt bridges: C:H.243, C:R.303, C:R.306
PO4.59: 11 residues within 4Å:- Chain E: M.174, G.175, H.243, Q.285, E.299, N.301, R.303, R.306
- Ligands: MN.44, MN.45, ADP.60
8 PLIP interactions:8 interactions with chain E- Hydrogen bonds: E:G.175, E:N.301
- Water bridges: E:Q.285, E:R.303, E:S.305
- Salt bridges: E:H.243, E:R.303, E:R.306
PO4.81: 11 residues within 4Å:- Chain G: M.174, G.175, H.243, Q.285, E.299, N.301, R.303, R.306
- Ligands: MN.66, MN.67, ADP.82
9 PLIP interactions:9 interactions with chain G- Hydrogen bonds: G:G.175
- Water bridges: G:T.244, G:T.244, G:R.303, G:R.306, G:R.306
- Salt bridges: G:H.243, G:R.303, G:R.306
- 8 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.15: 27 residues within 4Å:- Chain A: R.129, A.144, I.167, R.169, T.173, M.174, G.175, G.176, D.207, E.208, S.209, L.210, I.211, E.215, M.240, G.241, I.242, H.243, T.244, Q.285, I.298, E.299, N.301, T.376
- Ligands: MN.1, MN.2, PO4.14
15 PLIP interactions:15 interactions with chain A- Hydrogen bonds: A:G.175, A:G.176, A:E.208, A:L.210, A:E.215, A:G.241, A:T.244, A:Q.285, A:Q.285
- Water bridges: A:R.129, A:R.129
- Salt bridges: A:R.129, A:R.129, A:R.169, A:H.243
ADP.16: 18 residues within 4Å:- Chain A: P.690, V.713, R.715, M.725, H.754, F.755, L.756, E.761, A.785, G.786, V.787, H.788, S.789, Q.829, E.841, P.909
- Ligands: MN.5, K.6
15 PLIP interactions:15 interactions with chain A- Hydrogen bonds: A:R.715, A:R.715, A:H.754, A:L.756, A:E.761, A:G.786, A:S.789, A:S.789
- Water bridges: A:S.789, A:Q.829, A:Q.829, A:E.841, A:N.843
- Salt bridges: A:R.715, A:H.788
ADP.38: 26 residues within 4Å:- Chain C: R.129, I.167, R.169, T.173, M.174, G.175, G.176, D.207, E.208, S.209, L.210, I.211, E.215, M.240, G.241, I.242, H.243, T.244, Q.285, I.298, E.299, N.301, T.376
- Ligands: MN.21, MN.22, PO4.37
14 PLIP interactions:14 interactions with chain C- Hydrogen bonds: C:G.175, C:G.176, C:E.208, C:L.210, C:E.215, C:G.241, C:T.244, C:Q.285
- Water bridges: C:R.129, C:T.173
- Salt bridges: C:R.129, C:R.129, C:R.169, C:H.243
ADP.39: 19 residues within 4Å:- Chain C: P.690, V.713, R.715, M.725, H.754, F.755, L.756, E.761, A.785, G.786, V.787, H.788, S.789, Q.829, I.840, E.841, P.909
- Ligands: MN.25, K.26
13 PLIP interactions:13 interactions with chain C- Hydrogen bonds: C:R.715, C:R.715, C:H.754, C:L.756, C:E.761, C:G.786, C:S.789, C:Q.829
- Water bridges: C:E.841, C:N.843, C:N.843
- Salt bridges: C:R.715, C:H.788
ADP.60: 25 residues within 4Å:- Chain E: R.129, I.167, R.169, T.173, M.174, G.175, G.176, D.207, E.208, S.209, L.210, I.211, E.215, M.240, G.241, I.242, H.243, T.244, Q.285, I.298, E.299, T.376
- Ligands: MN.44, MN.45, PO4.59
15 PLIP interactions:15 interactions with chain E- Hydrogen bonds: E:G.175, E:G.176, E:E.208, E:L.210, E:E.215, E:G.241, E:I.242, E:T.244, E:Q.285, E:Q.285
- Water bridges: E:R.129
- Salt bridges: E:R.129, E:R.129, E:R.169, E:H.243
ADP.61: 19 residues within 4Å:- Chain E: P.690, V.713, R.715, M.725, H.754, F.755, L.756, E.761, A.785, G.786, V.787, H.788, S.789, Q.829, I.840, E.841, P.909
- Ligands: MN.48, K.49
13 PLIP interactions:13 interactions with chain E- Hydrogen bonds: E:R.715, E:R.715, E:H.754, E:L.756, E:E.761, E:G.786, E:S.789, E:S.789
- Water bridges: E:E.841, E:N.843, E:N.843
- Salt bridges: E:R.715, E:H.788
ADP.82: 25 residues within 4Å:- Chain G: R.129, I.167, R.169, T.173, M.174, G.175, G.176, D.207, E.208, S.209, L.210, I.211, E.215, M.240, G.241, I.242, H.243, T.244, Q.285, I.298, E.299, T.376
- Ligands: MN.66, MN.67, PO4.81
15 PLIP interactions:15 interactions with chain G- Hydrogen bonds: G:G.175, G:G.176, G:E.208, G:L.210, G:E.215, G:G.241, G:I.242, G:T.244, G:Q.285
- Water bridges: G:R.129, G:R.129
- Salt bridges: G:R.129, G:R.129, G:R.169, G:H.243
ADP.83: 18 residues within 4Å:- Chain G: P.690, R.715, M.725, H.754, F.755, L.756, E.761, A.785, G.786, V.787, H.788, S.789, Q.829, I.840, E.841, P.909
- Ligands: MN.70, K.71
16 PLIP interactions:16 interactions with chain G- Hydrogen bonds: G:R.715, G:R.715, G:H.754, G:L.756, G:E.761, G:G.786, G:S.789, G:S.789
- Water bridges: G:Q.829, G:Q.829, G:E.841, G:N.843, G:R.848, G:R.848
- Salt bridges: G:R.715, G:H.788
- 4 x ORN: L-ornithine(Non-covalent)
ORN.17: 9 residues within 4Å:- Chain A: E.783, D.791, A.793, E.892, V.893, L.907, Y.1040, D.1041, T.1042
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:L.907
- Hydrogen bonds: A:E.783, A:A.793, A:D.1041, A:D.1041, A:T.1042
- Water bridges: A:T.1043
ORN.40: 11 residues within 4Å:- Chain C: E.783, D.791, S.792, A.793, E.892, V.893, L.895, L.907, Y.1040, D.1041, T.1042
6 PLIP interactions:6 interactions with chain C- Hydrophobic interactions: C:L.895
- Hydrogen bonds: C:D.791, C:D.1041, C:T.1042
- Water bridges: C:E.783, C:P.905
ORN.62: 10 residues within 4Å:- Chain E: E.783, D.791, A.793, E.892, V.893, L.895, L.907, Y.1040, D.1041, T.1042
7 PLIP interactions:7 interactions with chain E- Hydrophobic interactions: E:L.895
- Hydrogen bonds: E:E.783, E:A.793, E:D.1041, E:D.1041, E:T.1042
- Water bridges: E:T.1043
ORN.84: 10 residues within 4Å:- Chain G: E.783, D.791, A.793, E.892, V.893, L.907, H.1039, Y.1040, D.1041, T.1042
5 PLIP interactions:5 interactions with chain G- Hydrogen bonds: G:D.791, G:D.1041, G:T.1042
- Water bridges: G:Y.1040, G:T.1043
- 4 x NET: TETRAETHYLAMMONIUM ION(Non-covalent)
NET.18: 6 residues within 4Å:- Chain A: Q.22, Q.93, T.94, N.97, N.936
- Ligands: CL.9
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:Q.93
NET.41: 6 residues within 4Å:- Chain C: Q.22, Q.93, T.94, N.97, N.936
- Ligands: CL.30
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:Q.93
NET.63: 6 residues within 4Å:- Chain E: Q.22, Q.93, T.94, N.97, N.936
- Ligands: CL.53
1 PLIP interactions:1 interactions with chain E- Hydrophobic interactions: E:Q.93
NET.85: 6 residues within 4Å:- Chain G: Q.22, Q.93, T.94, N.97, N.936
- Ligands: CL.75
1 PLIP interactions:1 interactions with chain G- Hydrophobic interactions: G:Q.93
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., Carbamoyl-phosphate synthetase. Creation of an escape route for ammonia. J.Biol.Chem. (2002)
- Release Date
- 2002-07-31
- Peptides
- carbamoyl phosphate synthetase large chain: ACEG
carbamoyl-phosphate synthetase small chain: BDFH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
EG
GB
BD
DF
FH
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 12 x MN: MANGANESE (II) ION(Non-covalent)
- 26 x K: POTASSIUM ION(Non-covalent)
- 28 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 8 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x ORN: L-ornithine(Non-covalent)
- 4 x NET: TETRAETHYLAMMONIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Thoden, J.B. et al., Carbamoyl-phosphate synthetase. Creation of an escape route for ammonia. J.Biol.Chem. (2002)
- Release Date
- 2002-07-31
- Peptides
- carbamoyl phosphate synthetase large chain: ACEG
carbamoyl-phosphate synthetase small chain: BDFH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
CE
EG
GB
BD
DF
FH
H