SMTL ID : 1m7i.1

CRYSTAL STRUCTURE OF A MONOCLONAL FAB SPECIFIC FOR SHIGELLA FLEXNERI Y LIPOPOLYSACCHARIDE COMPLEXED WITH A PENTASACCHARIDE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x RAO- NAG- RAM- RAM- RAM: alpha-L-rhamnopyranose-(1-2)-alpha-L-rhamnopyranose-(1-3)-alpha-L-rhamnopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-methyl 6-deoxy-alpha-L-rhamnopyranoside

RAO-NAG-RAM-RAM-RAM.1: 15 residues within 4Å: Chain A: H.31, Y.37, T.96, T.97, H.98, V.99, P.100 Chain B: W.33, E.35, E.50, G.101, G.102, A.103, G.105, M.107 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:Y.37 Hydrogen bonds: A:T.96, B:E.50, A:T.97 Water bridges: B:R.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vyas, N.K. et al., Molecular Recognition of Oligosaccharide Epitopes by a Monoclonal Fab Specific for Shigella flexneri Y Lipopolysaccharide: X-ray Structures and Thermodynamics. Biochemistry (2002)

Release Date

2003-07-22

Peptides

light chain of the monoclonal antibody Fab SYA/J6: A
heavy chain of the monoclonal antibody Fab SYA/J6: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

light chain of the monoclonal antibody Fab SYA/J6

heavy chain of the monoclonal antibody Fab SYA/J6

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