SMTL ID : 1m7s.1

Crystal Structure Analysis of Catalase CatF of Pseudomonas syringae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 27 residues within 4Å: Chain A: R.49, V.50, V.51, H.52, R.88, G.107, F.108, A.109, V.122, G.123, N.124, F.129, A.134, F.137, V.193, H.194, M.308, L.324, G.327, R.328, S.331, Y.332, T.335, Q.336, R.339 Chain D: L.38, D.42 35 PLIP interactions: 33 interactions with chain A, 1 interactions with chain D, 1 Ligand-Water interactions Hydrophobic interactions: A:V.50, A:H.52, A:A.109, A:V.122, A:N.124, A:F.129, A:A.134, A:F.137, A:F.137, A:F.137, A:F.137, A:V.193, A:M.308, A:L.324, A:L.324, A:R.328, A:Y.332, A:Y.332, A:Y.332, D:L.38 Hydrogen bonds: A:R.88, A:Q.336 Water bridges: A:R.49, A:V.50, A:A.109, A:T.335 Salt bridges: A:R.49, A:R.49, A:R.88, A:R.339 pi-Stacking: A:H.52, A:F.137 pi-Cation interactions: A:R.328 Metal complexes: A:Y.332, H2O.8 HEM.2: 27 residues within 4Å: Chain B: R.49, V.50, V.51, H.52, R.88, G.107, F.108, A.109, V.122, G.123, N.124, F.129, A.134, F.137, V.193, H.194, M.308, L.324, G.327, R.328, S.331, Y.332, T.335, Q.336, R.339 Chain C: L.38, D.42 34 PLIP interactions: 32 interactions with chain B, 1 interactions with chain C, 1 Ligand-Water interactions Hydrophobic interactions: B:V.50, B:H.52, B:A.109, B:V.122, B:F.129, B:A.134, B:F.137, B:F.137, B:F.137, B:F.137, B:V.193, B:M.308, B:L.324, B:L.324, B:R.328, B:Y.332, B:Y.332, B:T.335, C:L.38 Hydrogen bonds: B:R.88, B:Q.336 Water bridges: B:R.49, B:R.49, B:V.50, B:A.109 Salt bridges: B:R.49, B:R.49, B:R.88, B:R.339 pi-Stacking: B:H.52, B:F.137 pi-Cation interactions: B:R.328 Metal complexes: B:Y.332, H2O.42 HEM.3: 27 residues within 4Å: Chain B: L.38, D.42 Chain C: R.49, V.50, V.51, H.52, R.88, G.107, F.108, A.109, V.122, G.123, N.124, F.129, A.134, F.137, V.193, H.194, M.308, L.324, G.327, R.328, S.331, Y.332, T.335, Q.336, R.339 36 PLIP interactions: 34 interactions with chain C, 1 interactions with chain B, 1 Ligand-Water interactions Hydrophobic interactions: C:V.50, C:V.51, C:H.52, C:A.109, C:V.122, C:N.124, C:F.129, C:F.129, C:F.129, C:A.134, C:F.137, C:F.137, C:F.137, C:F.137, C:V.193, C:L.324, C:L.324, C:R.328, C:Y.332, C:Y.332, C:T.335, B:L.38 Hydrogen bonds: C:R.88, C:Q.336 Water bridges: C:R.49, C:T.335, C:T.335 Salt bridges: C:R.49, C:R.49, C:R.88, C:R.339 pi-Stacking: C:H.52, C:F.137 pi-Cation interactions: C:R.328 Metal complexes: C:Y.332, H2O.42 HEM.4: 26 residues within 4Å: Chain A: L.38, D.42 Chain D: R.49, V.50, V.51, H.52, R.88, G.107, F.108, V.122, G.123, N.124, F.129, A.134, F.137, V.193, H.194, M.308, L.324, G.327, R.328, S.331, Y.332, T.335, Q.336, R.339 35 PLIP interactions: 33 interactions with chain D, 1 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: D:V.50, D:V.51, D:H.52, D:V.122, D:N.124, D:F.129, D:F.129, D:F.129, D:A.134, D:F.137, D:F.137, D:F.137, D:F.137, D:V.193, D:V.193, D:L.324, D:L.324, D:R.328, D:Y.332, D:Y.332, A:L.38 Hydrogen bonds: D:R.88, D:Q.336 Water bridges: D:R.49, D:R.49, D:A.109 Salt bridges: D:R.49, D:R.49, D:R.88, D:R.339 pi-Stacking: D:H.52, D:F.137 pi-Cation interactions: D:R.328 Metal complexes: D:Y.332, H2O.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carpena, X. et al., Structure of the Clade 1 catalase, CatF of Pseudomonas syringae, at 1.8 A resolution. Proteins (2003)

Release Date

2002-08-28

Peptides

Catalase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Catalase