SMTL ID : 1m7y.1

Crystal structure of apple ACC synthase in complex with L-aminoethoxyvinylglycine

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x PPG: (2E,3E)-4-(2-AMINOETHOXY)-2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)IMINO]BUT-3-ENOIC ACID(Non-covalent)

PPG.1: 21 residues within 4Å: Chain A: Y.19, W.23, L.45, A.46, E.47, G.119, A.120, T.121, Y.145, T.198, N.202, D.230, I.232, Y.233, S.270, S.272, K.273, R.281, R.407 Chain B: Q.83 Ligands: MRD.2 26 PLIP interactions: 2 interactions with chain B, 24 interactions with chain A Water bridges: B:Q.83, B:Q.83, A:N.124, A:Y.145 Hydrophobic interactions: A:Y.145, A:T.198, A:I.232, A:I.232, A:Y.233 Hydrogen bonds: A:Y.19, A:A.46, A:E.47, A:E.47, A:A.120, A:T.121, A:T.121, A:N.202, A:Y.233, A:S.270, A:S.272, A:S.272, A:K.273 Salt bridges: A:K.273, A:R.281, A:R.407 pi-Stacking: A:Y.145 PPG.3: 21 residues within 4Å: Chain A: Q.83 Chain B: Y.19, W.23, L.45, A.46, E.47, G.119, A.120, T.121, Y.145, T.198, N.202, D.230, I.232, Y.233, S.270, S.272, K.273, R.281, R.407 Ligands: MRD.4 22 PLIP interactions: 20 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:Y.145, B:T.198, B:I.232, B:I.232, B:Y.233 Hydrogen bonds: B:Y.19, B:A.46, B:E.47, B:A.120, B:T.121, B:N.202, B:S.270, B:S.272, B:S.272, B:K.273 Water bridges: B:N.124, A:Q.83, A:Q.83 Salt bridges: B:K.273, B:R.281, B:R.407 pi-Stacking: B:Y.145

2 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.2: 8 residues within 4Å: Chain A: T.121, Y.145, R.150, R.281 Chain B: Q.83, Y.85, S.301 Ligands: PPG.1 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:Y.85 Hydrogen bonds: B:Q.83, A:R.150, A:R.150 Water bridges: B:Q.83, A:Y.145, A:Y.145 MRD.4: 8 residues within 4Å: Chain A: Q.83, Y.85, S.301 Chain B: T.121, Y.145, R.150, R.281 Ligands: PPG.3 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:R.150, B:R.150, A:Q.83 Water bridges: B:Y.145, A:Q.83 Hydrophobic interactions: A:Y.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Capitani, G. et al., Apple 1-Aminocyclopropane-1-carboxylate Synthase in Complex with the InhibitorL-Aminoethoxyvinylglycine. J.Biol.Chem. (2002)

Release Date

2002-12-23

Peptides

1-aminocyclopropane-1-carboxylate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

1-aminocyclopropane-1-carboxylate synthase

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