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SMTL ID : 1m8k.2
(1 other biounit)
Crystal Structure Of Methanobacterium Thermoautotrophicum Nicotinamide Mononucleotide Adenylyltransferase Mutant H19A complexed with NAD
Coordinates
PDB Format
Method
X-RAY DIFFRACTION 3.00 Å
Oligo State
homo-trimer
Ligands
3 x
SO4
:
SULFATE ION
(Non-functional Binders)
SO4.1:
6 residues within 4Å:
Chain A:
R.11
,
S.131
,
G.132
,
T.133
,
R.136
Ligands:
NAD.2
5
PLIP interactions
:
5 interactions with chain A
Hydrogen bonds:
A:G.132
,
A:T.133
,
A:T.133
Salt bridges:
A:R.11
,
A:R.136
SO4.3:
6 residues within 4Å:
Chain B:
R.11
,
S.131
,
G.132
,
T.133
,
R.136
Ligands:
NAD.4
6
PLIP interactions
:
6 interactions with chain B
Hydrogen bonds:
B:S.131
,
B:G.132
,
B:T.133
,
B:T.133
Salt bridges:
B:R.11
,
B:R.136
SO4.5:
6 residues within 4Å:
Chain C:
R.11
,
S.131
,
G.132
,
T.133
,
R.136
Ligands:
NAD.6
4
PLIP interactions
:
4 interactions with chain C
Hydrogen bonds:
C:G.132
,
C:T.133
Salt bridges:
C:R.11
,
C:R.136
3 x
NAD
:
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
(Non-covalent)
NAD.2:
20 residues within 4Å:
Chain A:
V.9
,
G.10
,
R.11
,
V.22
,
G.38
,
S.39
,
D.80
,
I.81
,
C.83
,
N.84
,
W.87
,
N.105
,
L.107
,
V.108
,
L.111
,
P.122
,
L.124
,
F.125
,
Y.126
Ligands:
SO4.1
13
PLIP interactions
:
13 interactions with chain A
Hydrophobic interactions:
A:L.107
,
A:L.111
Hydrogen bonds:
A:R.11
,
A:G.38
,
A:I.81
,
A:I.81
,
A:L.124
,
A:Y.126
,
A:Y.126
Salt bridges:
A:R.11
pi-Stacking:
A:W.87
,
A:W.87
,
A:Y.126
NAD.4:
17 residues within 4Å:
Chain B:
V.9
,
G.10
,
R.11
,
V.22
,
G.38
,
S.39
,
D.80
,
I.81
,
N.84
,
W.87
,
N.105
,
L.107
,
P.122
,
L.124
,
F.125
,
Y.126
Ligands:
SO4.3
14
PLIP interactions
:
14 interactions with chain B
Hydrophobic interactions:
B:L.107
Hydrogen bonds:
B:R.11
,
B:S.39
,
B:D.80
,
B:I.81
,
B:I.81
,
B:N.84
,
B:N.105
,
B:L.124
,
B:Y.126
Salt bridges:
B:R.11
pi-Stacking:
B:W.87
,
B:W.87
,
B:Y.126
NAD.6:
19 residues within 4Å:
Chain C:
V.9
,
G.10
,
R.11
,
V.22
,
G.38
,
S.39
,
D.80
,
I.81
,
N.84
,
W.87
,
N.105
,
L.107
,
V.108
,
L.111
,
P.122
,
L.124
,
F.125
,
Y.126
Ligands:
SO4.5
14
PLIP interactions
:
14 interactions with chain C
Hydrophobic interactions:
C:L.107
,
C:L.111
Hydrogen bonds:
C:R.11
,
C:G.38
,
C:D.80
,
C:I.81
,
C:I.81
,
C:L.124
,
C:Y.126
,
C:Y.126
Salt bridges:
C:R.11
pi-Stacking:
C:W.87
,
C:W.87
,
C:Y.126
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Saridakis, V. et al., Mutational, Structural, and Kinetic Studies of the ATP-binding Site of Methanobacterium thermoautotrophicum Nicotinamide Mononucleotide Adenylyltransferase. J.Biol.Chem. (2003)
Release Date
2003-07-15
Peptides
Nicotinamide-nucleotide Adenylyltransferase:
A
B
C
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
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Nicotinamide-nucleotide Adenylyltransferase
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