SMTL ID : 1m8s.1

Crystal Structures of Cadmium-binding Acidic Phospholipase A2 from the Venom of Agkistrodon halys pallas at 1.9 Resolution (crystal grown at pH 5.9)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x CD: CADMIUM ION(Non-covalent)

CD.1: 5 residues within 4Å: Chain A: Y.27, G.29, W.30, G.31, D.48 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:Y.27, A:G.29, A:G.31, A:D.48, A:D.48

2 x BU1: 1,4-BUTANEDIOL(Non-functional Binders)

BU1.2: 8 residues within 4Å: Chain A: F.5, E.6, I.9, G.17, M.18, Y.21, G.29, C.44 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.5 Hydrogen bonds: A:E.6, A:G.29 BU1.3: 3 residues within 4Å: Chain A: M.18, Q.19, S.22 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.19, A:S.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xu, S. et al., Structures of cadmium-binding acidic phospholipase A(2) from the venom of Agkistrodon halys Pallas at 1.9A resolutio. Biochem.Biophys.Res.Commun. (2003)

Release Date

2003-02-11

Peptides

phospholipase a2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

phospholipase a2

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