- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 2 x LTN: L-TRYPTOPHANAMIDE(Non-covalent)
LTN.4: 15 residues within 4Å:- Chain A: F.5, S.6, G.7, Q.9, V.40, H.43, Q.107, Y.125, M.129, D.132, I.133, V.141, Q.147
- Ligands: MG.2, ATP.3
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:F.5, A:F.5, A:D.132, A:I.133, A:V.141
- Hydrogen bonds: A:Q.9, A:Y.125
LTN.12: 15 residues within 4Å:- Chain B: F.5, S.6, G.7, Q.9, V.40, H.43, Q.107, Y.125, M.129, D.132, I.133, V.141, Q.147
- Ligands: MG.10, ATP.11
9 PLIP interactions:9 interactions with chain B- Hydrophobic interactions: B:F.5, B:F.5, B:D.132, B:I.133, B:V.141
- Hydrogen bonds: B:Q.9, B:Y.125, B:Y.125, B:D.132
- 2 x CIT: CITRIC ACID(Non-functional Binders)
CIT.5: 8 residues within 4Å:- Chain A: S.11, G.12, V.47, W.48, Q.49, D.50, S.196
- Ligands: ATP.3
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:S.11, A:Q.49, A:Q.49, A:D.50, A:S.196, A:S.196
- Water bridges: A:Q.9, A:E.53, A:N.57, A:N.57, A:K.111
CIT.13: 8 residues within 4Å:- Chain B: S.11, G.12, V.47, W.48, Q.49, D.50, S.196
- Ligands: ATP.11
10 PLIP interactions:10 interactions with chain B- Hydrogen bonds: B:S.11, B:Q.49, B:Q.49, B:D.50, B:S.196, B:S.196
- Water bridges: B:Q.9, B:N.57, B:N.57, B:K.111
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 5 residues within 4Å:- Chain A: K.218, T.222, Y.265, G.266, K.269
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:T.222
GOL.7: 9 residues within 4Å:- Chain A: N.34, C.35, Y.36, T.73, Q.74, A.75, T.76, K.306
- Ligands: NA.1
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.34, A:C.35, A:T.73, A:Q.74, A:K.306
GOL.8: 3 residues within 4Å:- Chain A: L.248, E.278, T.279
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:L.248
GOL.14: 5 residues within 4Å:- Chain B: K.218, T.222, Y.265, G.266, K.269
No protein-ligand interaction detected (PLIP)GOL.15: 9 residues within 4Å:- Chain B: N.34, C.35, Y.36, T.73, Q.74, A.75, T.76, K.306
- Ligands: NA.9
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:N.34, B:C.35, B:T.73, B:Q.74, B:T.76, B:K.306
GOL.16: 3 residues within 4Å:- Chain B: L.248, E.278, T.279
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:L.248
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Retailleau, P. et al., Interconversion of ATP binding and conformational free energies by tryptophanyl-tRNA synthetase: structures of ATP bound to open and closed, pre-transition-state conformations. J.Mol.Biol. (2003)
- Release Date
- 2003-01-07
- Peptides
- tryptophan-tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.15 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 2 x LTN: L-TRYPTOPHANAMIDE(Non-covalent)
- 2 x CIT: CITRIC ACID(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Retailleau, P. et al., Interconversion of ATP binding and conformational free energies by tryptophanyl-tRNA synthetase: structures of ATP bound to open and closed, pre-transition-state conformations. J.Mol.Biol. (2003)
- Release Date
- 2003-01-07
- Peptides
- tryptophan-tRNA ligase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A