SMTL ID : 1mfz.2 (1 other biounit)

Partially refined 2.8 A Crystal structure of GDP-mannose dehydrogenase from P. aeruginosa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x GDX: GUANOSINE 5'-(TRIHYDROGEN DIPHOSPHATE), P'-D-MANNOPYRANOSYL ESTER(Non-covalent)

GDX.1: 23 residues within 4Å: Chain A: E.157, F.158, L.159, R.160, E.161, K.210, N.214, H.217, V.221, N.225 Chain B: L.251, Y.256, Y.257, M.258, R.259, G.261, F.262, F.264, G.265, C.268, L.269, F.323, K.324 20 PLIP interactions: 8 interactions with chain A, 12 interactions with chain B Hydrogen bonds: A:E.157, A:L.159, A:E.161, A:K.210, A:N.214, A:H.217, A:N.225, B:Y.256, B:Y.256, B:Y.257, B:Y.257, B:Y.257, B:R.259, B:R.259, B:F.262, B:G.265, B:F.323 Salt bridges: A:K.210, B:K.324, B:K.324 GDX.2: 23 residues within 4Å: Chain A: Y.256, Y.257, M.258, R.259, G.261, F.262, F.264, G.265, C.268, L.269, F.323, K.324 Chain B: Y.10, E.157, F.158, L.159, R.160, E.161, K.210, N.214, H.217, V.221, N.225 20 PLIP interactions: 8 interactions with chain B, 12 interactions with chain A Hydrogen bonds: B:Y.10, B:Y.10, B:E.157, B:E.161, B:K.210, B:N.214, B:N.225, A:Y.256, A:Y.256, A:Y.257, A:Y.257, A:Y.257, A:R.259, A:R.259, A:F.262, A:G.265, A:F.323 Salt bridges: B:K.210, A:K.324, A:K.324

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Snook, C.F. et al., The crystal structure of GDP-mannose dehydrogenase: A key enzyme in alginate biosynthesis of P. aeruginosa. Biochemistry (2003)

Release Date

2003-05-06

Peptides

GDP-mannose 6-dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

GDP-mannose 6-dehydrogenase

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