SMTL ID : 1mg5.1

Crystal structure of Drosophila melanogaster alcohol dehydrogenase complexed with NADH and acetate at 1.6 A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

homo-dimer

Ligands

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: S.139, T.141, Y.152, I.184, V.190 Ligands: NAI.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.141, A:I.184 Hydrogen bonds: A:S.139, A:S.139, A:Y.152 ACT.3: 8 residues within 4Å: Chain B: S.139, V.140, T.141, I.146, Y.152, I.184, V.190 Ligands: NAI.4 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:V.140, B:T.141, B:I.146, B:I.184 Hydrogen bonds: B:S.139

2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.2: 30 residues within 4Å: Chain A: A.13, G.16, G.17, I.18, D.38, R.39, I.40, Y.63, D.64, V.65, T.66, G.92, A.93, G.94, I.95, R.103, V.107, I.137, G.138, S.139, Y.152, K.156, P.182, G.183, I.184, T.185, T.187, L.189, V.190 Ligands: ACT.1 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:P.182, A:L.189 Hydrogen bonds: A:A.13, A:G.16, A:G.17, A:I.18, A:D.64, A:D.64, A:V.65, A:G.92, A:G.94, A:K.156, A:T.185, A:T.185, A:T.187 Water bridges: A:G.19, A:R.39, A:T.188 NAI.4: 30 residues within 4Å: Chain B: A.13, G.16, G.17, I.18, D.38, R.39, I.40, Y.63, D.64, V.65, G.92, A.93, G.94, I.95, R.103, V.107, I.137, G.138, S.139, Y.152, K.156, P.182, G.183, I.184, T.185, T.187, T.188, L.189, V.190 Ligands: ACT.3 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:P.182 Hydrogen bonds: B:A.13, B:L.15, B:G.16, B:G.17, B:I.18, B:R.39, B:D.64, B:D.64, B:V.65, B:G.92, B:G.94, B:Y.152, B:K.156, B:T.185, B:T.185, B:T.187, B:T.187 Water bridges: B:G.19, B:R.39, B:R.39, B:R.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benach, J. et al., Drosophila alcohol dehydrogenase: acetate-enzyme interactions and novel insights into the effects of electrostatics on catalysis. J.Mol.Biol. (2005)

Release Date

2003-10-14

Peptides

alcohol dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

alcohol dehydrogenase