SMTL ID : 1mgo.1

Horse Liver Alcohol Dehydrogenase Phe93Ala Mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.20 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.46, H.67, C.174 Ligands: NAD.3 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.46, A:H.67, A:C.174, H2O.8 ZN.2: 5 residues within 4Å: Chain A: C.97, G.98, C.100, C.103, C.111 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.97, A:C.100, A:C.103, A:C.111 ZN.4: 5 residues within 4Å: Chain B: C.46, H.67, C.174 Ligands: NAD.6, MPD.9 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.46, B:H.67, B:C.174, H2O.17 ZN.5: 5 residues within 4Å: Chain B: C.97, G.98, C.100, C.103, C.111 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.97, B:C.100, B:C.103, B:C.111

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.3: 28 residues within 4Å: Chain A: C.46, R.47, S.48, H.51, C.174, T.178, G.199, L.200, G.201, G.202, V.203, D.223, I.224, N.225, K.228, V.268, I.269, G.270, R.271, V.292, G.293, V.294, A.317, I.318, F.319, L.362, R.369 Ligands: ZN.1 23 PLIP interactions: 23 interactions with chain A Hydrophobic interactions: A:T.178, A:V.203 Hydrogen bonds: A:R.47, A:H.51, A:L.200, A:G.201, A:G.202, A:V.203, A:I.224, A:I.269, A:R.271, A:V.292, A:V.294, A:F.319 Water bridges: A:R.47, A:R.47, A:G.204, A:G.320, A:S.367, A:R.369, A:R.369 Salt bridges: A:R.47, A:R.369 NAD.6: 29 residues within 4Å: Chain B: C.46, R.47, S.48, H.51, C.174, T.178, G.199, L.200, G.201, G.202, V.203, D.223, I.224, N.225, K.228, V.268, I.269, G.270, R.271, V.292, G.293, V.294, A.317, I.318, F.319, L.362, R.369 Ligands: ZN.4, MPD.9 25 PLIP interactions: 25 interactions with chain B Hydrophobic interactions: B:T.178, B:V.203 Hydrogen bonds: B:R.47, B:H.51, B:T.178, B:L.200, B:G.201, B:G.202, B:V.203, B:I.224, B:I.269, B:R.271, B:V.292, B:V.294, B:F.319 Water bridges: B:R.47, B:R.47, B:G.204, B:R.271, B:G.320, B:S.367, B:R.369, B:R.369 Salt bridges: B:R.47, B:R.369

2 x PFB: 2,3,4,5,6-PENTAFLUOROBENZYL ALCOHOL(Non-covalent)

PFB.7: 7 residues within 4Å: Chain B: T.122, G.126, T.127, S.128, P.136, I.137, H.138 No protein-ligand interaction detected (PLIP) PFB.8: 8 residues within 4Å: Chain A: L.57, L.116, S.117, V.294, I.318 Chain B: M.306, L.309, S.310 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.116 Water bridges: A:D.297 Halogen bonds: A:S.117

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.9: 10 residues within 4Å: Chain B: S.48, L.57, H.67, A.93, T.94, L.116, L.141, I.318 Ligands: ZN.4, NAD.6 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:L.57, B:L.116, B:L.141, B:I.318 Hydrogen bonds: B:H.67 Water bridges: B:T.94

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rubach, J.K. et al., Mobility of Fluorobenzyl Alcohols Bound to Liver Alcohol Dehydrogenases as Determined by NMR and X-ray Crystallographic Studies. Biochemistry (2002)

Release Date

2002-11-13

Peptides

Alcohol Dehydrogenase E chain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Alcohol Dehydrogenase E chain