SMTL ID : 1mi4.1

Glyphosate insensitive G96A mutant EPSP synthase liganded with shikimate-3-phosphate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x S3P: SHIKIMATE-3-PHOSPHATE(Non-covalent)

S3P.1: 14 residues within 4Å: Chain A: K.22, S.23, R.27, T.97, S.169, S.170, Q.171, S.197, Y.200, D.313, N.336, K.340 Ligands: FMT.2, FMT.3 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:Q.171, A:Y.200, A:Y.200, A:Y.200 Hydrogen bonds: A:K.22, A:S.23, A:S.169, A:S.170, A:Q.171, A:Q.171, A:S.197, A:S.197, A:D.313, A:N.336, A:K.340, A:K.340 Water bridges: A:R.100, A:S.169, A:R.344, A:R.344 Salt bridges: A:R.27, A:K.340

14 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 7 residues within 4Å: Chain A: K.22, D.313, E.341, R.344, H.385, R.386 Ligands: S3P.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.22, A:K.22, A:R.344, A:R.344, A:R.386 FMT.3: 9 residues within 4Å: Chain A: K.22, N.94, A.95, A.96, T.97, R.124, E.341, K.411 Ligands: S3P.1 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:K.22, A:A.96, A:T.97, A:R.124, A:R.124, A:K.411 Water bridges: A:Q.171, A:Q.171 FMT.4: 3 residues within 4Å: Chain A: A.380, T.381, Y.382 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.381, A:Y.382 FMT.5: 4 residues within 4Å: Chain A: K.373, L.374, S.397, D.398 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.374, A:S.397, A:D.398 Water bridges: A:D.398 FMT.6: 5 residues within 4Å: Chain A: T.65, L.66, S.67, R.72, E.74 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.65, A:R.72, A:E.74 FMT.7: 3 residues within 4Å: Chain A: P.125, Y.335, V.339 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.335, A:Y.335 FMT.8: 3 residues within 4Å: Chain A: E.89, L.90, F.91 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.91 FMT.9: 4 residues within 4Å: Chain A: T.58, V.62, S.63, Y.64 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.62, A:Y.64 FMT.10: 4 residues within 4Å: Chain A: R.298, E.300, L.301, F.324 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.301, A:F.324 Water bridges: A:R.298 FMT.11: 4 residues within 4Å: Chain A: D.13, G.14, T.259, K.261 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.14, A:G.14, A:K.261 FMT.12: 3 residues within 4Å: Chain A: T.141, L.143, R.152 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.152 FMT.13: 3 residues within 4Å: Chain A: A.303, I.304, T.328 3 PLIP interactions: 3 interactions with chain A Water bridges: A:D.305, A:D.305, A:T.328 FMT.14: 2 residues within 4Å: Chain A: Y.237, L.238 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.238 Water bridges: A:Y.237, A:Y.237, A:L.238 FMT.15: 5 residues within 4Å: Chain A: P.8, I.9, A.10, Q.425, A.426 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eschenburg, S. et al., How the mutation glycine96 to alanine confers glyphosate insensitivity to 5-enolpyruvyl shikimate-3-phosphate synthase from Escherichia coli. PLANTA (2002)

Release Date

2002-12-18

Peptides

5-enolpyruvylshikimate-3-phosphate synthase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

5-enolpyruvylshikimate-3-phosphate synthase