SMTL ID : 1mj8.1

High Resolution Crystal Structure Of The Fab Fragment of The Esterolytic Antibody MS6-126

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-oligomer

Ligands

5 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: E.1, P.100 Chain B: E.62, R.63 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.62, A:E.1 Salt bridges: B:R.63 PO4.2: 2 residues within 4Å: Chain A: A.8, S.22 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:A.8, A:S.22 Water bridges: A:S.20, A:S.22, A:S.22, A:S.22 PO4.3: 5 residues within 4Å: Chain A: T.169, D.170, D.172 Chain B: V.169, H.170 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:V.169, A:D.172 Water bridges: B:T.171, A:T.169, A:T.169, A:D.170, A:S.173 Salt bridges: B:H.170 PO4.4: 4 residues within 4Å: Chain B: S.66, K.67, S.84, S.85 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.84, B:S.85, B:S.85 Salt bridges: B:K.67 PO4.5: 7 residues within 4Å: Chain A: H.96, F.101 Chain B: W.33, N.35, N.50, K.99 Ligands: GOL.7 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.35, B:N.35, B:N.50 Water bridges: B:W.33 Salt bridges: B:K.99, A:H.96

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 8 residues within 4Å: Chain A: S.167, S.181, T.183 Chain B: F.172, P.173, T.182, L.183, S.184 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:S.167, A:S.181, A:T.183, B:P.173, B:S.184, B:S.184 GOL.7: 4 residues within 4Å: Chain A: H.96 Chain B: N.35, K.99 Ligands: PO4.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruzheinikov, S.N. et al., High-resolution crystal structure of the Fab-fragments of a family of mouse catalytic antibodies with esterase activity. J.Mol.Biol. (2003)

Release Date

2003-09-23

Peptides

IMMUNOGLOBULIN MS6-126: A
IMMUNOGLOBULIN MS6-126: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

IMMUNOGLOBULIN MS6-126

IMMUNOGLOBULIN MS6-126