SMTL ID : 1mjj.1 (1 other biounit)

HIGH RESOLUTION CRYSTAL STRUCTURE OF THE COMPLEX OF THE FAB FRAGMENT OF ESTEROLYTIC ANTIBODY MS6-12 AND A TRANSITION-STATE ANALOG

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.216, N.217 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.217 Salt bridges: A:R.216 SO4.3: 3 residues within 4Å: Chain B: P.7, G.8, P.203 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.8 Water bridges: B:A.9, B:A.9, B:P.203 SO4.4: 3 residues within 4Å: Chain B: R.40, K.63, D.89 8 PLIP interactions: 8 interactions with chain B Water bridges: B:K.38, B:K.38, B:K.38, B:K.63, B:D.89 Salt bridges: B:K.38, B:R.40, B:K.63

1 x HAL: N-{[2-({[1-(4-CARBOXYBUTANOYL)AMINO]-2-PHENYLETHYL}-HYDROXYPHOSPHINYL)OXY]ACETYL}-2-PHENYLETHYLAMINE(Non-covalent)

HAL.2: 13 residues within 4Å: Chain A: H.31, Y.37, L.94, H.96, L.97, Y.99, F.101 Chain B: W.33, N.35, N.50, K.99, P.104, W.106 12 PLIP interactions: 4 interactions with chain B, 8 interactions with chain A Hydrophobic interactions: B:P.104, B:W.106, A:Y.37, A:L.94, A:Y.99, A:F.101, A:F.101 Hydrogen bonds: B:N.35, B:N.50, A:H.96, A:H.96 pi-Stacking: A:Y.37

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruzheinikov, S.N. et al., High-resolution crystal structure of the Fab-fragments of a family of mouse catalytic antibodies with esterase activity. J.Mol.Biol. (2003)

Release Date

2003-09-23

Peptides

IMMUNOGLOBULIN MS6-12: A
IMMUNOGLOBULIN MS6-12: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

IMMUNOGLOBULIN MS6-12

IMMUNOGLOBULIN MS6-12

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