- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 5 residues within 4Å:- Chain A: H.115, D.116, E.145, T.186
- Ligands: ZN.1
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:D.116
MG.5: 3 residues within 4Å:- Chain B: H.115, D.116
- Ligands: ZN.4
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:D.116
MG.8: 5 residues within 4Å:- Chain C: H.115, D.116, E.145, H.148, T.186
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:D.116
MG.11: 3 residues within 4Å:- Chain D: D.116, E.145
- Ligands: ZN.10
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:D.116
MG.14: 3 residues within 4Å:- Chain E: D.116, E.145
- Ligands: ZN.13
1 PLIP interactions:1 interactions with chain E- Metal complexes: E:D.116
MG.17: 3 residues within 4Å:- Chain F: D.116, E.145
- Ligands: ZN.16
1 PLIP interactions:1 interactions with chain F- Metal complexes: F:D.116
- 6 x ZAR: 6-(4-DIFLUOROMETHOXY-3-METHOXY-PHENYL)-2H-PYRIDAZIN-3-ONE(Non-covalent)
ZAR.3: 12 residues within 4Å:- Chain A: Y.74, M.188, N.236, P.237, Y.244, W.247, T.248, I.251, F.255, M.272, Q.284, F.287
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:I.251
- Hydrogen bonds: A:Q.284
- pi-Stacking: A:F.287
ZAR.6: 12 residues within 4Å:- Chain B: Y.74, M.188, N.236, P.237, Y.244, W.247, T.248, I.251, F.255, M.272, Q.284, F.287
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.284
- pi-Stacking: B:F.287
ZAR.9: 11 residues within 4Å:- Chain C: Y.74, M.188, N.236, P.237, Y.244, W.247, T.248, I.251, M.272, Q.284, F.287
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Q.284
- pi-Stacking: C:F.287
ZAR.12: 12 residues within 4Å:- Chain D: Y.74, M.188, N.236, P.237, Y.244, W.247, T.248, I.251, F.255, M.272, Q.284, F.287
3 PLIP interactions:3 interactions with chain D- Hydrophobic interactions: D:I.251
- Hydrogen bonds: D:Q.284
- pi-Stacking: D:F.287
ZAR.15: 12 residues within 4Å:- Chain E: Y.74, M.188, N.236, P.237, Y.244, W.247, T.248, I.251, F.255, M.272, Q.284, F.287
3 PLIP interactions:3 interactions with chain E- Hydrophobic interactions: E:I.251
- Hydrogen bonds: E:Q.284
- pi-Stacking: E:F.287
ZAR.18: 12 residues within 4Å:- Chain F: Y.74, M.188, N.236, P.237, Y.244, W.247, T.248, I.251, F.255, M.272, Q.284, F.287
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:Q.284
- pi-Stacking: F:F.287
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lee, M.E. et al., Crystal structure of phosphodiesterase 4D and inhibitor complex. FEBS LETT. (2002)
- Release Date
- 2003-03-01
- Peptides
- Phosphodiesterase 4D: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
ED
HE
IF
J
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- homo-hexamer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 6 x ZAR: 6-(4-DIFLUOROMETHOXY-3-METHOXY-PHENYL)-2H-PYRIDAZIN-3-ONE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lee, M.E. et al., Crystal structure of phosphodiesterase 4D and inhibitor complex. FEBS LETT. (2002)
- Release Date
- 2003-03-01
- Peptides
- Phosphodiesterase 4D: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
ED
HE
IF
J