SMTL ID : 1mm9.1 (2 other biounits)

Streptavidin Mutant with Insertion of Fibronectin Hexapeptide, including RGD

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

homo-tetramer

Ligands

8 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.1: 8 residues within 4Å: Chain A: Y.31, W.70, T.81, W.83, W.99, L.101, D.119 Ligands: MRD.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.70, A:T.81, A:W.99, A:W.99 Hydrogen bonds: A:Y.31, A:T.81, A:W.83 Water bridges: A:N.11 MRD.2: 8 residues within 4Å: Chain A: S.33, Y.42, W.70, R.75, A.77, S.79, L.101 Ligands: MRD.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.70 Hydrogen bonds: A:Y.42, A:S.79, A:S.79 Water bridges: A:S.33, A:R.75 MRD.3: 8 residues within 4Å: Chain B: Y.31, W.70, T.81, W.83, W.99, L.101, D.119 Ligands: MRD.4 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:W.70, B:T.81, B:W.99, B:W.99 Hydrogen bonds: B:T.81, B:T.81, B:W.83 Water bridges: B:N.11 MRD.4: 8 residues within 4Å: Chain B: S.33, Y.42, W.70, R.75, A.77, S.79, L.101 Ligands: MRD.3 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:W.70 Hydrogen bonds: B:Y.42, B:S.79, B:S.79 Water bridges: B:S.33, B:R.75 MRD.5: 8 residues within 4Å: Chain C: Y.31, W.70, T.81, W.83, W.99, L.101, D.119 Ligands: MRD.6 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:W.70, C:T.81, C:W.99, C:W.99 Hydrogen bonds: C:Y.31, C:T.81, C:W.83 Water bridges: C:N.11 MRD.6: 8 residues within 4Å: Chain C: S.33, Y.42, W.70, R.75, A.77, S.79, L.101 Ligands: MRD.5 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:W.70 Hydrogen bonds: C:Y.42, C:S.79, C:S.79 Water bridges: C:S.33, C:R.75 MRD.7: 8 residues within 4Å: Chain D: Y.31, W.70, T.81, W.83, W.99, L.101, D.119 Ligands: MRD.8 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:W.70, D:T.81, D:W.99, D:W.99 Hydrogen bonds: D:T.81, D:T.81, D:W.83 Water bridges: D:N.11 MRD.8: 8 residues within 4Å: Chain D: S.33, Y.42, W.70, R.75, A.77, S.79, L.101 Ligands: MRD.7 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:W.70 Hydrogen bonds: D:Y.42, D:S.79, D:S.79 Water bridges: D:S.33, D:R.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Le Trong, I. et al., Structural characterization and comparison of RGD cell-adhesion recognition sites engineered into streptavidin. Acta Crystallogr.,Sect.D (2003)

Release Date

2003-05-06

Peptides

Streptavidin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Streptavidin

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