SMTL ID : 1mmb.1

COMPLEX OF BB94 WITH THE CATALYTIC DOMAIN OF MATRIX METALLOPROTEINASE-8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.58, N.60, G.90, I.91, G.92, D.94 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.58, A:G.90, A:G.92, A:D.94, H2O.2, H2O.2 CA.2: 6 residues within 4Å: Chain A: D.75, G.76, N.78, I.80, D.98, E.101 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.75, A:G.76, A:N.78, A:I.80, A:D.98, A:E.101

2 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: H.68, D.70, H.83, H.96 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.68, A:D.70, A:H.83, A:H.96 ZN.4: 4 residues within 4Å: Chain A: H.118, H.122, H.128 Ligands: BAT.5 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.118, A:H.122, A:H.128

1 x BAT: 4-(N-HYDROXYAMINO)-2R-ISOBUTYL-2S-(2-THIENYLTHIOMETHYL)SUCCINYL-L-PHENYLALANINE-N-METHYLAMIDE(Non-covalent)

BAT.5: 17 residues within 4Å: Chain A: G.79, I.80, L.81, A.82, H.83, A.84, Y.110, V.115, H.118, E.119, H.122, H.128, Y.137, P.138, N.139, Y.140 Ligands: ZN.4 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.115 Hydrogen bonds: A:G.79, A:L.81, A:A.82, A:P.138, A:N.139, A:Y.140 Water bridges: A:A.84, A:A.84 pi-Stacking: A:H.128

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grams, F. et al., Structure determination and analysis of human neutrophil collagenase complexed with a hydroxamate inhibitor. Biochemistry (1995)

Release Date

1996-10-14

Peptides

MATRIX METALLOPROTEINASE-8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MATRIX METALLOPROTEINASE-8

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