SMTL ID : 1mms.1 (1 other biounit)

Crystal structure of the ribosomal PROTEIN L11-RNA complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.57 Å

Oligo State

monomer

Ligands

5 x CD: CADMIUM ION(Non-functional Binders)(Non-covalent)

CD.1: 1 residues within 4Å: Chain A: G.21 No protein-ligand interaction detected (PLIP) CD.2: 2 residues within 4Å: Chain A: A.36, G.37 No protein-ligand interaction detected (PLIP) CD.4: 1 residues within 4Å: Chain A: A.17 No protein-ligand interaction detected (PLIP) CD.16: 4 residues within 4Å: Chain B: M.112, A.117, N.118, S.119 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:A.117 CD.17: 5 residues within 4Å: Chain A: G.9, U.10 Chain B: T.71, K.111, D.114 No protein-ligand interaction detected (PLIP)

10 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: A.23, G.43, U.44, C.47 No protein-ligand interaction detected (PLIP) MG.5: 4 residues within 4Å: Chain A: U.11, G.12, G.13, A.20 No protein-ligand interaction detected (PLIP) MG.6: 1 residues within 4Å: Chain A: A.56 No protein-ligand interaction detected (PLIP) MG.7: 1 residues within 4Å: Chain A: G.1 No protein-ligand interaction detected (PLIP) MG.8: 4 residues within 4Å: Chain A: A.19, A.20, C.22, A.23 No protein-ligand interaction detected (PLIP) MG.9: 1 residues within 4Å: Chain A: A.34 No protein-ligand interaction detected (PLIP) MG.10: 4 residues within 4Å: Chain A: G.12, A.20, G.21, C.22 No protein-ligand interaction detected (PLIP) MG.11: 1 residues within 4Å: Chain A: U.33 No protein-ligand interaction detected (PLIP) MG.12: 1 residues within 4Å: Chain A: G.4 No protein-ligand interaction detected (PLIP) MG.15: 2 residues within 4Å: Chain B: K.102, E.105 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:E.105

5 x MMC: METHYL MERCURY ION(Non-functional Binders)(Non-covalent)

MMC.13: 3 residues within 4Å: Chain A: A.27, U.28, G.39 No protein-ligand interaction detected (PLIP) MMC.14: 3 residues within 4Å: Chain A: U.11, A.19, A.20 No protein-ligand interaction detected (PLIP) MMC.18: 3 residues within 4Å: Chain B: T.18, C.38, K.39 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.18 MMC.19: 5 residues within 4Å: Chain B: A.17, T.18, V.23, I.34, C.38 No protein-ligand interaction detected (PLIP) MMC.20: 2 residues within 4Å: Chain A: C.47 Chain B: H.30 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wimberly, B.T. et al., A detailed view of a ribosomal active site: the structure of the L11-RNA complex. Cell(Cambridge,Mass.) (1999)

Release Date

2000-04-17

Peptides

PROTEIN (RIBOSOMAL PROTEIN L11): B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

PROTEIN (RIBOSOMAL PROTEIN L11)

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